4.0:Information of module
pif4pif5 mut 1h FR
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 3.659e-40
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 5.692e-37
GO:0006081 cellular aldehyde metabolic process BP 5.854e-37
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 4.889e-04
GO:0042221 response to chemical BP 4.936e-04
GO:0009719 response to endogenous stimulus BP 1.734e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif4pif5 mut 1h FR		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.441 -0.630
2 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.308 0.084
3 264839_at AT1G03630 POR C, protochlorophyllide oxidoreductase C, PORC 0.235 0.110
4 256655_at AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 0.212 0.469
5 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.200 0.151
6 247268_at AT5G64080 AtXYP1, XYP1, xylogen protein 1 0.195 0.305
7 249340_at AT5G41140 [Myosin heavy chain-related protein] 0.190 -0.637
8 262508_at AT1G11300 [protein serine/threonine kinases] 0.185 -0.730
9 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.180 0.840
10 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.178 0.692
11 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 0.169 1.447
12 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 0.168 -0.766
13 252441_at AT3G46780 PTAC16, plastid transcriptionally active 16 0.165 0.099
14 258349_at AT3G17609 HYH, HY5-homolog 0.163 0.004
15 262086_at AT1G56050 [GTP-binding protein-related] 0.162 0.335
16 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 0.162 0.451
17 248094_at AT5G55220 [trigger factor type chaperone family protein] 0.160 0.304
18 248493_at AT5G51100 FSD2, Fe superoxide dismutase 2 0.159 1.569
19 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] 0.145 -0.861
20 262509_at AT1G11290 CRR22, CHLORORESPIRATORY REDUCTION22 0.144 -0.210
21 258884_at AT3G10050 OMR1, L-O-methylthreonine resistant 1 0.143 1.422
22 261368_at AT1G53070 [Legume lectin family protein] 0.143 0.394
23 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.142 0.869
24 257497_at AT1G51430 unknown 0.138 -0.357
25 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 0.137 0.587
26 257673_at AT3G20370 [TRAF-like family protein] 0.137 0.827
27 258136_at AT3G24560 RSY3, RASPBERRY 3 0.136 0.313
28 248920_at AT5G45930 CHL I2, CHLI-2, CHLI2, magnesium chelatase i2 0.135 0.266
29 259188_at AT3G01510 LSF1, like SEX4 1 0.134 -0.349
30 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.134 0.923
31 265442_at AT2G20940 unknown 0.132 0.766
32 248247_at AT5G53210 SPCH, SPEECHLESS 0.132 -0.841
33 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.131 -0.251
34 247376_at AT5G63310 ATNDPK2, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, NDPK IA, NUCLEOSIDE DIPHOSPHATE KINASE IA, NDPK IA IA, NDPK1A, NDP KINASE 1A, NDPK2, nucleoside diphosphate kinase 2 0.128 1.540
35 265073_at AT1G55480 ZKT, protein containing PDZ domain, a K-box domain, and a TPR region 0.128 0.091
36 245150_at AT2G47590 PHR2, photolyase/blue-light receptor 2 0.126 0.668
37 246538_at AT5G15520 [Ribosomal protein S19e family protein] 0.126 1.078
38 261788_at AT1G15980 NDF1, NDH-dependent cyclic electron flow 1, NDH48, NAD(P)H DEHYDROGENASE SUBUNIT 48, PnsB1, Photosynthetic NDH subcomplex B 1 0.125 0.061
39 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.125 0.036
40 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.124 0.354
41 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.124 -0.201
42 266863_at AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 0.124 -0.073
43 255078_at AT4G09010 APX4, ascorbate peroxidase 4, TL29, thylakoid lumen 29 0.123 0.543
44 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 0.122 0.106
45 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 0.121 1.360
46 258128_at AT3G24590 PLSP1, plastidic type i signal peptidase 1 0.120 0.541
47 265312_at AT2G20240 TRM17, TON1 Recruiting Motif 17 0.118 0.646
48 258149_at AT3G18110 EMB1270, embryo defective 1270 0.117 0.807
49 250371_at AT5G11450 PPD5, PsbP domain protein 5 0.116 -0.068
50 245876_at AT1G26230 Cpn60beta4, chaperonin-60beta4 0.116 0.539
51 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.073 0.317
52 251012_at AT5G02580 unknown -0.299 1.082
53 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.214 0.449
54 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.197 -0.881
55 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.193 -0.129
56 246888_at AT5G26270 unknown -0.182 0.325
57 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.178 0.034
58 267021_at AT2G39300 unknown -0.173 -0.447
59 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.171 0.298
60 259884_at AT1G76390 PUB43, plant U-box 43 -0.168 -0.387
61 255493_at AT4G02690 AtLFG3, LFG3, LIFEGUARD 3 -0.167 -1.042
62 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.165 -0.576
63 260732_at AT1G17520 [Homeodomain-like/winged-helix DNA-binding family protein] -0.162 0.409
64 263370_at AT2G20500 unknown -0.157 0.211
65 261073_at AT1G07300 [josephin protein-related] -0.153 -1.025
66 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.152 -0.355
67 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.149 -0.202
68 255306_at AT4G04740 ATCPK23, CPK23, calcium-dependent protein kinase 23 -0.147 -0.957
69 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.139 -0.970
70 267224_at AT2G43990 unknown -0.130 -0.173
71 265098_at AT1G04010 ATPSAT1, ERP1, enhanced response to Phytophthora 1, PSAT1, phospholipid sterol acyl transferase 1 -0.126 0.468
72 248509_at AT5G50335 unknown -0.123 -0.376
73 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.122 -0.608
74 266355_at AT2G01400 unknown -0.116 0.229
75 265186_at AT1G23560 unknown -0.115 -0.920
76 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.113 -0.122
77 263702_at AT1G31240 [Bromodomain transcription factor] -0.113 -0.897
78 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.110 0.951
79 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 -0.109 0.628
80 252721_at AT3G43990 [Bromo-adjacent homology (BAH) domain-containing protein] -0.109 -0.390
81 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.107 0.225
82 259974_at AT1G76430 PHT1;9, phosphate transporter 1;9 -0.105 -0.730
83 251329_at AT3G61450 ATSYP73, SYP73, syntaxin of plants 73 -0.103 -1.595
84 247646_at AT5G59990 [CCT motif family protein] -0.101 -0.085
85 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 -0.100 -0.338
86 248035_at AT5G55900 [Sucrase/ferredoxin-like family protein] -0.100 -0.524
87 267069_at AT2G41010 ATCAMBP25, calmodulin (CAM)-binding protein of 25 kDa, CAMBP25, calmodulin (CAM)-binding protein of 25 kDa -0.098 -0.128
88 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.098 -0.635
89 262123_at AT1G59630 [F-box associated ubiquitination effector family protein] -0.095 -0.690
90 248292_at AT5G53030 unknown -0.093 -0.987
91 250938_at AT5G03180 [RING/U-box superfamily protein] -0.093 0.030
92 254300_at AT4G22780 ACR7, ACT domain repeat 7 -0.088 -0.407
93 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.087 0.440
94 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.087 -0.872
95 254064_at AT4G25410 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.086 -0.098
96 253641_at AT4G29980 unknown -0.084 -0.214
97 255312_at AT4G04560 [copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.084 -0.289
98 254812_at AT4G12250 GAE5, UDP-D-glucuronate 4-epimerase 5 -0.084 -0.372
99 266607_at AT2G46300 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.082 0.354
100 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.082 -0.972