4.0:Information of module
pif4pif5 mut 1h FR
In comparison with Col-0 0h NAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 3.659e-40
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 5.692e-37
GO:0006081 cellular aldehyde metabolic process BP 5.854e-37
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 4.889e-04
GO:0042221 response to chemical BP 4.936e-04
GO:0009719 response to endogenous stimulus BP 1.734e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif4pif5 mut 1h FR		 Log2 signal ratio
Col-0 0h NAA
1 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.441 0.093
2 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.308 -0.065
3 264839_at AT1G03630 POR C, protochlorophyllide oxidoreductase C, PORC 0.235 0.033
4 256655_at AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 0.212 -0.010
5 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.200 -0.180
6 247268_at AT5G64080 AtXYP1, XYP1, xylogen protein 1 0.195 0.060
7 249340_at AT5G41140 [Myosin heavy chain-related protein] 0.190 -0.022
8 262508_at AT1G11300 [protein serine/threonine kinases] 0.185 0.042
9 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.180 0.128
10 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.178 0.320
11 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 0.169 0.310
12 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 0.168 0.031
13 252441_at AT3G46780 PTAC16, plastid transcriptionally active 16 0.165 0.074
14 258349_at AT3G17609 HYH, HY5-homolog 0.163 -0.250
15 262086_at AT1G56050 [GTP-binding protein-related] 0.162 -0.031
16 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 0.162 0.041
17 248094_at AT5G55220 [trigger factor type chaperone family protein] 0.160 -0.002
18 248493_at AT5G51100 FSD2, Fe superoxide dismutase 2 0.159 0.100
19 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] 0.145 0.020
20 262509_at AT1G11290 CRR22, CHLORORESPIRATORY REDUCTION22 0.144 0.040
21 258884_at AT3G10050 OMR1, L-O-methylthreonine resistant 1 0.143 -0.132
22 261368_at AT1G53070 [Legume lectin family protein] 0.143 0.127
23 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.142 0.085
24 257497_at AT1G51430 unknown 0.138 0.129
25 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 0.137 0.165
26 257673_at AT3G20370 [TRAF-like family protein] 0.137 -0.191
27 258136_at AT3G24560 RSY3, RASPBERRY 3 0.136 0.010
28 248920_at AT5G45930 CHL I2, CHLI-2, CHLI2, magnesium chelatase i2 0.135 -0.068
29 259188_at AT3G01510 LSF1, like SEX4 1 0.134 0.073
30 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.134 -0.074
31 265442_at AT2G20940 unknown 0.132 0.028
32 248247_at AT5G53210 SPCH, SPEECHLESS 0.132 0.035
33 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.131 0.076
34 247376_at AT5G63310 ATNDPK2, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, NDPK IA, NUCLEOSIDE DIPHOSPHATE KINASE IA, NDPK IA IA, NDPK1A, NDP KINASE 1A, NDPK2, nucleoside diphosphate kinase 2 0.128 -0.024
35 265073_at AT1G55480 ZKT, protein containing PDZ domain, a K-box domain, and a TPR region 0.128 0.010
36 245150_at AT2G47590 PHR2, photolyase/blue-light receptor 2 0.126 -0.046
37 246538_at AT5G15520 [Ribosomal protein S19e family protein] 0.126 -0.016
38 261788_at AT1G15980 NDF1, NDH-dependent cyclic electron flow 1, NDH48, NAD(P)H DEHYDROGENASE SUBUNIT 48, PnsB1, Photosynthetic NDH subcomplex B 1 0.125 -0.037
39 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.125 0.017
40 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.124 -0.048
41 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.124 0.099
42 266863_at AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 0.124 -0.010
43 255078_at AT4G09010 APX4, ascorbate peroxidase 4, TL29, thylakoid lumen 29 0.123 0.068
44 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 0.122 -0.019
45 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 0.121 0.020
46 258128_at AT3G24590 PLSP1, plastidic type i signal peptidase 1 0.120 0.002
47 265312_at AT2G20240 TRM17, TON1 Recruiting Motif 17 0.118 -0.062
48 258149_at AT3G18110 EMB1270, embryo defective 1270 0.117 0.029
49 250371_at AT5G11450 PPD5, PsbP domain protein 5 0.116 0.006
50 245876_at AT1G26230 Cpn60beta4, chaperonin-60beta4 0.116 0.108
51 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.073 0.191
52 251012_at AT5G02580 unknown -0.299 -0.137
53 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.214 0.066
54 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.197 0.460
55 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.193 0.125
56 246888_at AT5G26270 unknown -0.182 -0.145
57 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.178 0.023
58 267021_at AT2G39300 unknown -0.173 -0.126
59 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.171 -0.185
60 259884_at AT1G76390 PUB43, plant U-box 43 -0.168 0.033
61 255493_at AT4G02690 AtLFG3, LFG3, LIFEGUARD 3 -0.167 0.130
62 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.165 0.053
63 260732_at AT1G17520 [Homeodomain-like/winged-helix DNA-binding family protein] -0.162 0.119
64 263370_at AT2G20500 unknown -0.157 0.158
65 261073_at AT1G07300 [josephin protein-related] -0.153 -0.073
66 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.152 0.017
67 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.149 0.132
68 255306_at AT4G04740 ATCPK23, CPK23, calcium-dependent protein kinase 23 -0.147 0.031
69 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.139 0.109
70 267224_at AT2G43990 unknown -0.130 0.054
71 265098_at AT1G04010 ATPSAT1, ERP1, enhanced response to Phytophthora 1, PSAT1, phospholipid sterol acyl transferase 1 -0.126 0.051
72 248509_at AT5G50335 unknown -0.123 0.006
73 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.122 0.304
74 266355_at AT2G01400 unknown -0.116 0.057
75 265186_at AT1G23560 unknown -0.115 -0.270
76 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.113 -0.061
77 263702_at AT1G31240 [Bromodomain transcription factor] -0.113 0.098
78 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.110 -0.046
79 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 -0.109 0.130
80 252721_at AT3G43990 [Bromo-adjacent homology (BAH) domain-containing protein] -0.109 0.047
81 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.107 -0.102
82 259974_at AT1G76430 PHT1;9, phosphate transporter 1;9 -0.105 -0.029
83 251329_at AT3G61450 ATSYP73, SYP73, syntaxin of plants 73 -0.103 0.073
84 247646_at AT5G59990 [CCT motif family protein] -0.101 -0.013
85 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 -0.100 0.099
86 248035_at AT5G55900 [Sucrase/ferredoxin-like family protein] -0.100 0.001
87 267069_at AT2G41010 ATCAMBP25, calmodulin (CAM)-binding protein of 25 kDa, CAMBP25, calmodulin (CAM)-binding protein of 25 kDa -0.098 -0.095
88 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.098 -0.117
89 262123_at AT1G59630 [F-box associated ubiquitination effector family protein] -0.095 0.079
90 248292_at AT5G53030 unknown -0.093 0.093
91 250938_at AT5G03180 [RING/U-box superfamily protein] -0.093 0.167
92 254300_at AT4G22780 ACR7, ACT domain repeat 7 -0.088 0.353
93 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.087 0.105
94 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.087 0.060
95 254064_at AT4G25410 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.086 -0.130
96 253641_at AT4G29980 unknown -0.084 0.036
97 255312_at AT4G04560 [copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.084 0.038
98 254812_at AT4G12250 GAE5, UDP-D-glucuronate 4-epimerase 5 -0.084 -0.026
99 266607_at AT2G46300 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.082 0.032
100 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.082 0.604