4.0:Information of module
ahg2-1
In comparison with root cortex pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0055086 nucleobase-containing small molecule met... BP 2.738e-06
GO:0009117 nucleotide metabolic process BP 7.475e-06
GO:0006753 nucleoside phosphate metabolic process BP 8.502e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 6.139e-13
GO:0010053 root epidermal cell differentiation BP 1.313e-12
GO:0090627 plant epidermal cell differentiation BP 2.050e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ahg2-1		 Log2 signal ratio
root cortex pH4.6
1 244901_at ATMG00640 ORF25 0.848 0.173
2 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.772 0.065
3 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.761 0.533
4 244945_at ATMG00110 ABCI2, ATP-binding cassette I2, CCB206, cytochrome C biogenesis 206 0.752 0.164
5 257333_at ATMG01360 COX1, cytochrome oxidase 0.743 -0.021
6 244925_at ATMG00510 NAD7, NADH dehydrogenase subunit 7 0.582 -0.019
7 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.564 0.239
8 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L 0.543 0.428
9 263515_at AT2G21640 unknown 0.507 0.465
10 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.479 0.281
11 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.469 0.203
12 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 0.408 0.036
13 244921_s_at ATMG01000 ORF114 0.374 0.196
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.363 0.336
15 246888_at AT5G26270 unknown 0.350 -0.131
16 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.346 0.033
17 266729_at AT2G03130 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] 0.344 0.077
18 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.343 -0.055
19 256188_at AT1G30160 unknown 0.287 0.015
20 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.240 -0.061
21 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.219 0.397
22 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.198 -0.022
23 262459_at AT1G50400 [Eukaryotic porin family protein] 0.197 0.423
24 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.193 -0.016
25 252383_at AT3G47780 ABCA7, ATP-binding cassette A7, ATATH6, A. THALIANA ABC2 HOMOLOG 6, ATH6, ABC2 homolog 6 0.187 0.105
26 252864_at AT4G39740 HCC2, homologue of copper chaperone SCO1 2 0.186 0.264
27 264830_at AT1G03710 [Cystatin/monellin superfamily protein] 0.183 0.092
28 251871_at AT3G54520 unknown 0.162 0.090
29 257336_at ATMG01410 ORF204, open reading frame 204 0.159 0.062
30 253411_at AT4G32980 ATH1, homeobox gene 1 0.150 -0.112
31 266738_at AT2G47010 unknown 0.150 -0.082
32 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] 0.149 0.033
33 248101_at AT5G55200 MGE1, mitochondrial GrpE 1 0.146 0.225
34 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] 0.146 0.048
35 255621_at AT4G01390 [TRAF-like family protein] 0.142 0.004
36 249384_at AT5G39890 unknown 0.140 -0.038
37 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.134 0.358
38 257474_at AT1G80850 [DNA glycosylase superfamily protein] 0.132 -0.052
39 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.131 -0.041
40 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.129 0.158
41 249258_at AT5G41650 [Lactoylglutathione lyase / glyoxalase I family protein] 0.129 0.096
42 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 0.126 0.220
43 245893_at AT5G09270 unknown 0.122 0.159
44 258380_at AT3G16650 PRL2, Pleiotropic regulatory locus 2 0.121 0.095
45 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.121 0.011
46 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.119 0.327
47 247616_at AT5G60260 unknown 0.119 -0.124
48 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.776 -0.062
49 255516_at AT4G02270 RHS13, root hair specific 13 -0.495 -0.246
50 260556_at AT2G43620 [Chitinase family protein] -0.333 -0.011
51 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.319 0.578
52 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.314 -0.191
53 251448_at AT3G59845 [Zinc-binding dehydrogenase family protein] -0.310 -0.050
54 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.275 0.021
55 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 -0.273 -0.041
56 260668_at AT1G19530 unknown -0.267 -0.025
57 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.257 -0.149
58 264138_at AT1G78950 AtBAS, AtLUP4, BAS, beta-amyrin synthase -0.256 -0.049
59 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.255 -0.074
60 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.253 -0.196
61 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.245 -0.131
62 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.244 -0.111
63 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 -0.233 -0.120
64 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.229 -0.050
65 248926_at AT5G45880 [Pollen Ole e 1 allergen and extensin family protein] -0.220 -0.029
66 256584_at AT3G28750 unknown -0.220 -0.041
67 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase -0.203 -0.167
68 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.199 -0.042
69 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.194 -0.035
70 252447_at AT3G47040 [Glycosyl hydrolase family protein] -0.192 -0.126
71 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.187 -0.026
72 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.186 0.163
73 255595_at AT4G01700 [Chitinase family protein] -0.185 0.114
74 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.175 -0.035
75 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.164 0.069
76 264590_at AT2G17710 unknown -0.164 -0.196
77 248856_at AT5G46620 unknown -0.164 -0.033
78 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 -0.157 -0.029
79 256283_at AT3G12540 unknown -0.156 -0.060
80 266344_at AT2G01580 unknown -0.154 -0.078
81 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 -0.154 -0.072
82 258367_at AT3G14370 WAG2 -0.153 -0.190
83 246868_at AT5G26010 [Protein phosphatase 2C family protein] -0.149 -0.008
84 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] -0.148 -0.016
85 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.145 -0.091
86 247765_at AT5G58860 CYP86, CYP86A1, cytochrome P450, family 86, subfamily A, polypeptide 1, HORST, hydroxylase of root suberized tissue -0.143 0.040
87 254263_at AT4G23493 unknown -0.139 -0.177
88 256799_at AT3G18560 unknown -0.136 -0.052
89 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] -0.136 -0.087
90 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 -0.134 0.006
91 262743_at AT1G29020 [Calcium-binding EF-hand family protein] -0.132 -0.083
92 246943_at AT5G25440 [Protein kinase superfamily protein] -0.131 0.129
93 252834_at AT4G40070 [RING/U-box superfamily protein] -0.128 -0.067
94 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.126 -0.133