4.0:Information of module
Col-0 wt Hypoxic
In comparison with Stem tissue 5 days NAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 4.373e-23
GO:0010033 response to organic substance BP 7.528e-23
GO:0001101 response to acid chemical BP 7.804e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 1.169e-14
GO:0010054 trichoblast differentiation BP 2.110e-12
GO:0010053 root epidermal cell differentiation BP 3.626e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 wt Hypoxic		 Log2 signal ratio
Stem tissue 5 days NAA
1 250464_at AT5G10040 unknown 1.436 1.484
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.141 0.820
3 259879_at AT1G76650 CML38, calmodulin-like 38 1.135 0.515
4 247431_at AT5G62520 SRO5, similar to RCD one 5 1.109 0.665
5 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.084 1.076
6 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.036 0.409
7 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.026 0.031
8 254200_at AT4G24110 unknown 1.011 0.657
9 255807_at AT4G10270 [Wound-responsive family protein] 0.898 1.021
10 253298_at AT4G33560 [Wound-responsive family protein] 0.872 0.402
11 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.831 0.592
12 257925_at AT3G23170 unknown 0.825 0.377
13 247024_at AT5G66985 unknown 0.765 0.909
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.753 1.254
15 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.737 0.098
16 249384_at AT5G39890 unknown 0.724 0.622
17 253060_at AT4G37710 [VQ motif-containing protein] 0.714 -0.038
18 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.711 0.829
19 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.704 0.551
20 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.691 0.326
21 245226_at AT3G29970 [B12D protein] 0.670 0.791
22 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.658 0.528
23 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.656 0.075
24 245401_at AT4G17670 unknown 0.634 0.083
25 266486_at AT2G47950 unknown 0.625 0.100
26 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.615 0.013
27 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.607 -0.104
28 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.597 -0.122
29 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.588 0.222
30 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.574 0.247
31 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.572 0.463
32 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.555 0.071
33 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.531 -0.013
34 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.522 0.491
35 262124_at AT1G59660 [Nucleoporin autopeptidase] 0.508 0.208
36 255900_at AT1G17830 unknown 0.499 0.049
37 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.492 0.264
38 266800_at AT2G22880 [VQ motif-containing protein] 0.489 -0.038
39 250472_at AT5G10210 unknown 0.488 0.089
40 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.483 -0.241
41 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.472 0.586
42 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.470 0.059
43 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.464 0.441
44 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.460 0.262
45 261567_at AT1G33055 unknown 0.450 0.447
46 257922_at AT3G23150 ETR2, ethylene response 2 0.450 0.500
47 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.444 0.515
48 258606_at AT3G02840 [ARM repeat superfamily protein] 0.444 0.291
49 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D 0.437 0.117
50 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.432 0.019
51 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.428 -0.231
52 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.427 0.288
53 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.425 -0.591
54 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.425 0.016
55 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.421 0.281
56 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.417 0.311
57 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.416 -0.233
58 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.414 0.121
59 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.658 0.018
60 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.595 0.271
61 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.548 -0.054
62 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.521 -0.027
63 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.483 -0.200
64 252638_at AT3G44540 FAR4, fatty acid reductase 4 -0.483 0.062
65 261157_at AT1G34510 [Peroxidase superfamily protein] -0.456 -0.056
66 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.438 -0.045
67 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.432 0.009
68 247878_at AT5G57760 unknown -0.431 -0.076
69 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.416 0.141
70 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.395 -0.018
71 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.394 -0.016
72 253155_at AT4G35720 unknown -0.389 -0.013
73 246229_at AT4G37160 sks15, SKU5 similar 15 -0.378 -0.093
74 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.378 -0.235
75 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.368 0.294
76 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.366 -0.471
77 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.363 0.146
78 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.361 0.058
79 265102_at AT1G30870 [Peroxidase superfamily protein] -0.359 -0.214
80 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.356 0.509
81 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.337 0.033
82 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] -0.336 0.223
83 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.334 -0.229
84 255808_at AT4G10280 [RmlC-like cupins superfamily protein] -0.333 -0.138
85 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.321 -0.129
86 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.320 0.314
87 266191_at AT2G39040 [Peroxidase superfamily protein] -0.320 -0.130
88 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.319 -0.575
89 257105_at AT3G15300 [VQ motif-containing protein] -0.317 0.008
90 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.316 -0.026
91 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.315 -0.009
92 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.312 -0.053
93 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.312 0.209
94 250778_at AT5G05500 MOP10 -0.300 -0.143
95 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.292 0.476
96 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.292 -0.157
97 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.288 -0.281
98 267372_at AT2G26290 ARSK1, root-specific kinase 1 -0.287 0.019
99 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.271 0.080
100 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.266 0.021
101 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.255 -0.008
102 253734_at AT4G29180 RHS16, root hair specific 16 -0.254 -0.106
103 253667_at AT4G30170 [Peroxidase family protein] -0.253 0.425
104 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.252 -0.050
105 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.251 0.075
106 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.251 0.046
107 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.245 -0.097
108 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.237 0.024
109 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 -0.233 0.209
110 258646_at AT3G08040 ATFRD3, FRD3, FERRIC REDUCTASE DEFECTIVE 3, MAN1, MANGANESE ACCUMULATOR 1 -0.232 -0.102
111 266941_at AT2G18980 [Peroxidase superfamily protein] -0.225 0.009
112 265897_at AT2G25680 MOT1, molybdate transporter 1 -0.224 0.094
113 251513_at AT3G59220 ATPIRIN1, PRN, pirin, PRN1 -0.221 0.086
114 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.215 0.081
115 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.212 -0.265