4.0:Information of module
Col-0 wt Hypoxic
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 4.373e-23
GO:0010033 response to organic substance BP 7.528e-23
GO:0001101 response to acid chemical BP 7.804e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 1.169e-14
GO:0010054 trichoblast differentiation BP 2.110e-12
GO:0010053 root epidermal cell differentiation BP 3.626e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 wt Hypoxic		 Log2 signal ratio
root callus inducing medium 12 h
1 250464_at AT5G10040 unknown 1.436 -0.783
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.141 -0.500
3 259879_at AT1G76650 CML38, calmodulin-like 38 1.135 -0.532
4 247431_at AT5G62520 SRO5, similar to RCD one 5 1.109 -0.238
5 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.084 -0.427
6 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.036 -0.597
7 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.026 -0.539
8 254200_at AT4G24110 unknown 1.011 -0.420
9 255807_at AT4G10270 [Wound-responsive family protein] 0.898 -0.447
10 253298_at AT4G33560 [Wound-responsive family protein] 0.872 -0.271
11 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.831 -0.308
12 257925_at AT3G23170 unknown 0.825 -0.584
13 247024_at AT5G66985 unknown 0.765 -0.393
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.753 -0.281
15 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.737 -0.437
16 249384_at AT5G39890 unknown 0.724 -0.296
17 253060_at AT4G37710 [VQ motif-containing protein] 0.714 -0.751
18 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.711 -0.335
19 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.704 -0.210
20 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.691 -0.914
21 245226_at AT3G29970 [B12D protein] 0.670 -0.713
22 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.658 -0.561
23 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.656 -0.538
24 245401_at AT4G17670 unknown 0.634 -0.336
25 266486_at AT2G47950 unknown 0.625 -0.191
26 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.615 -0.133
27 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.607 -0.363
28 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.597 -0.303
29 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.588 -0.364
30 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.574 -0.156
31 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.572 -0.249
32 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.555 -0.378
33 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.531 0.157
34 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.522 -0.156
35 262124_at AT1G59660 [Nucleoporin autopeptidase] 0.508 -0.399
36 255900_at AT1G17830 unknown 0.499 -0.360
37 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.492 -0.226
38 266800_at AT2G22880 [VQ motif-containing protein] 0.489 -0.142
39 250472_at AT5G10210 unknown 0.488 -0.764
40 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.483 -0.346
41 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.472 -0.133
42 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.470 -0.259
43 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.464 -0.636
44 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.460 0.205
45 261567_at AT1G33055 unknown 0.450 -0.375
46 257922_at AT3G23150 ETR2, ethylene response 2 0.450 -0.129
47 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.444 -0.145
48 258606_at AT3G02840 [ARM repeat superfamily protein] 0.444 -0.665
49 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D 0.437 -0.271
50 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.432 -0.774
51 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.428 -0.166
52 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.427 -0.123
53 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.425 -0.273
54 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.425 -0.468
55 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.421 -0.079
56 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.417 -0.192
57 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.416 -0.012
58 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.414 -0.143
59 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.658 -0.740
60 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.595 -0.088
61 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.548 0.442
62 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.521 -0.748
63 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.483 -0.621
64 252638_at AT3G44540 FAR4, fatty acid reductase 4 -0.483 0.377
65 261157_at AT1G34510 [Peroxidase superfamily protein] -0.456 0.611
66 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.438 -0.542
67 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.432 0.372
68 247878_at AT5G57760 unknown -0.431 -0.074
69 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.416 0.292
70 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.395 0.453
71 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.394 0.465
72 253155_at AT4G35720 unknown -0.389 0.355
73 246229_at AT4G37160 sks15, SKU5 similar 15 -0.378 -0.629
74 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.378 0.494
75 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.368 0.200
76 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.366 -0.095
77 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.363 0.396
78 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.361 -0.155
79 265102_at AT1G30870 [Peroxidase superfamily protein] -0.359 0.396
80 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.356 0.157
81 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.337 0.522
82 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] -0.336 0.417
83 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.334 -0.072
84 255808_at AT4G10280 [RmlC-like cupins superfamily protein] -0.333 0.261
85 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.321 0.249
86 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.320 0.058
87 266191_at AT2G39040 [Peroxidase superfamily protein] -0.320 -0.653
88 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.319 -0.835
89 257105_at AT3G15300 [VQ motif-containing protein] -0.317 0.520
90 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.316 -0.121
91 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.315 0.387
92 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.312 0.271
93 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.312 -0.006
94 250778_at AT5G05500 MOP10 -0.300 0.403
95 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.292 0.700
96 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.292 -0.524
97 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.288 0.174
98 267372_at AT2G26290 ARSK1, root-specific kinase 1 -0.287 0.512
99 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.271 0.746
100 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.266 -0.336
101 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.255 0.250
102 253734_at AT4G29180 RHS16, root hair specific 16 -0.254 0.072
103 253667_at AT4G30170 [Peroxidase family protein] -0.253 -0.251
104 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.252 -0.007
105 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.251 -0.658
106 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.251 -0.100
107 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.245 -0.021
108 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.237 0.258
109 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 -0.233 -0.051
110 258646_at AT3G08040 ATFRD3, FRD3, FERRIC REDUCTASE DEFECTIVE 3, MAN1, MANGANESE ACCUMULATOR 1 -0.232 0.002
111 266941_at AT2G18980 [Peroxidase superfamily protein] -0.225 0.056
112 265897_at AT2G25680 MOT1, molybdate transporter 1 -0.224 -0.451
113 251513_at AT3G59220 ATPIRIN1, PRN, pirin, PRN1 -0.221 0.516
114 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.215 -0.397
115 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.212 0.166