4.0:Information of module
Col-0 wt Hypoxic
In comparison with csn3-1 dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 4.373e-23
GO:0010033 response to organic substance BP 7.528e-23
GO:0001101 response to acid chemical BP 7.804e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 1.169e-14
GO:0010054 trichoblast differentiation BP 2.110e-12
GO:0010053 root epidermal cell differentiation BP 3.626e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 wt Hypoxic		 Log2 signal ratio
csn3-1 dark
1 250464_at AT5G10040 unknown 1.436 0.170
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.141 0.279
3 259879_at AT1G76650 CML38, calmodulin-like 38 1.135 0.184
4 247431_at AT5G62520 SRO5, similar to RCD one 5 1.109 0.385
5 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.084 -0.111
6 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.036 0.128
7 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.026 0.171
8 254200_at AT4G24110 unknown 1.011 0.388
9 255807_at AT4G10270 [Wound-responsive family protein] 0.898 0.324
10 253298_at AT4G33560 [Wound-responsive family protein] 0.872 0.549
11 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.831 0.424
12 257925_at AT3G23170 unknown 0.825 -0.010
13 247024_at AT5G66985 unknown 0.765 0.275
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.753 0.339
15 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.737 -0.057
16 249384_at AT5G39890 unknown 0.724 0.274
17 253060_at AT4G37710 [VQ motif-containing protein] 0.714 0.128
18 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.711 0.483
19 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.704 0.000
20 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.691 -0.011
21 245226_at AT3G29970 [B12D protein] 0.670 0.204
22 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.658 0.053
23 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.656 0.066
24 245401_at AT4G17670 unknown 0.634 0.078
25 266486_at AT2G47950 unknown 0.625 0.047
26 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.615 -0.421
27 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.607 -1.129
28 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.597 -0.017
29 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.588 -0.074
30 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.574 0.351
31 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.572 0.051
32 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.555 -0.108
33 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.531 -0.691
34 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.522 0.234
35 262124_at AT1G59660 [Nucleoporin autopeptidase] 0.508 0.531
36 255900_at AT1G17830 unknown 0.499 0.229
37 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.492 0.240
38 266800_at AT2G22880 [VQ motif-containing protein] 0.489 -0.246
39 250472_at AT5G10210 unknown 0.488 -0.616
40 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.483 0.184
41 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.472 0.237
42 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.470 -0.335
43 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.464 0.042
44 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.460 0.123
45 261567_at AT1G33055 unknown 0.450 -0.179
46 257922_at AT3G23150 ETR2, ethylene response 2 0.450 0.109
47 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.444 0.359
48 258606_at AT3G02840 [ARM repeat superfamily protein] 0.444 0.035
49 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D 0.437 0.111
50 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.432 0.082
51 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.428 -0.245
52 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.427 0.170
53 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.425 0.185
54 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.425 0.186
55 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.421 -0.223
56 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.417 0.117
57 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.416 -0.369
58 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.414 0.086
59 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.658 -0.897
60 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.595 0.037
61 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.548 -0.440
62 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.521 -0.694
63 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.483 -0.313
64 252638_at AT3G44540 FAR4, fatty acid reductase 4 -0.483 -0.226
65 261157_at AT1G34510 [Peroxidase superfamily protein] -0.456 -0.753
66 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.438 -0.461
67 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.432 -0.233
68 247878_at AT5G57760 unknown -0.431 -0.802
69 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.416 -0.216
70 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.395 0.012
71 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.394 -0.517
72 253155_at AT4G35720 unknown -0.389 -1.024
73 246229_at AT4G37160 sks15, SKU5 similar 15 -0.378 -0.442
74 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.378 0.086
75 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.368 -0.351
76 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.366 -0.336
77 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.363 -0.415
78 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.361 -0.270
79 265102_at AT1G30870 [Peroxidase superfamily protein] -0.359 -0.824
80 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.356 -0.104
81 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.337 -0.492
82 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] -0.336 -0.153
83 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.334 -0.110
84 255808_at AT4G10280 [RmlC-like cupins superfamily protein] -0.333 -0.395
85 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.321 -0.022
86 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.320 -0.700
87 266191_at AT2G39040 [Peroxidase superfamily protein] -0.320 -0.339
88 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.319 -0.163
89 257105_at AT3G15300 [VQ motif-containing protein] -0.317 -0.220
90 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.316 0.099
91 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.315 -0.374
92 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.312 -0.793
93 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.312 0.116
94 250778_at AT5G05500 MOP10 -0.300 -0.738
95 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.292 -0.394
96 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.292 -0.846
97 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.288 -0.058
98 267372_at AT2G26290 ARSK1, root-specific kinase 1 -0.287 -0.081
99 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.271 -0.019
100 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.266 -0.120
101 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] -0.255 -0.156
102 253734_at AT4G29180 RHS16, root hair specific 16 -0.254 -0.061
103 253667_at AT4G30170 [Peroxidase family protein] -0.253 -0.219
104 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.252 -0.079
105 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.251 -0.692
106 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.251 -0.942
107 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.245 -0.451
108 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.237 -0.384
109 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 -0.233 -0.547
110 258646_at AT3G08040 ATFRD3, FRD3, FERRIC REDUCTASE DEFECTIVE 3, MAN1, MANGANESE ACCUMULATOR 1 -0.232 -0.175
111 266941_at AT2G18980 [Peroxidase superfamily protein] -0.225 -0.371
112 265897_at AT2G25680 MOT1, molybdate transporter 1 -0.224 0.269
113 251513_at AT3G59220 ATPIRIN1, PRN, pirin, PRN1 -0.221 -0.185
114 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.215 -0.049
115 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.212 -0.751