4.0:Information of module
2d red light grown pif1pif3pif4pif5 (pifq) mutant
In comparison with FarRed Light 4 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042440 pigment metabolic process BP 4.254e-12
GO:0005982 starch metabolic process BP 5.210e-10
GO:0016108 tetraterpenoid metabolic process BP 8.944e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042445 hormone metabolic process BP 1.534e-05
GO:0042446 hormone biosynthetic process BP 1.933e-05
GO:0008152 metabolic process BP 8.998e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2d red light grown pif1pif3pif4pif5 (pifq) mutant		 Log2 signal ratio
FarRed Light 4 h
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 1.114 -0.019
2 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.471 0.296
3 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.431 0.003
4 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.396 -0.038
5 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.360 0.095
6 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 0.350 0.246
7 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.340 -0.020
8 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.340 -0.028
9 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.332 0.014
10 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 0.320 -0.036
11 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.317 0.017
12 264777_at AT1G08630 THA1, threonine aldolase 1 0.281 0.114
13 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] 0.269 0.063
14 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.264 0.011
15 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.255 -0.023
16 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.250 0.012
17 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.230 -0.096
18 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] 0.230 -0.014
19 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.229 0.068
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.227 0.011
21 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.223 0.042
22 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.221 -0.037
23 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] 0.221 0.098
24 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.220 0.060
25 265511_at AT2G05540 [Glycine-rich protein family] 0.210 -0.007
26 256603_at AT3G28270 unknown 0.208 0.024
27 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.200 -0.045
28 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.199 0.329
29 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 0.196 0.106
30 252983_at AT4G37980 ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-1, elicitor-activated gene 3-1 0.192 0.047
31 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.192 0.011
32 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.189 -0.009
33 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.186 -0.039
34 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 0.184 0.041
35 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.907 -0.056
36 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.644 0.004
37 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.619 -0.084
38 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.525 -0.036
39 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.484 -0.076
40 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.409 -0.579
41 252763_at AT3G42725 [Putative membrane lipoprotein] -0.405 0.000
42 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.259 -0.558
43 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.223 0.013
44 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.213 -0.065
45 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.206 -0.226
46 259947_at AT1G71530 [Protein kinase superfamily protein] -0.201 -0.008
47 257951_at AT3G21700 ATSGP2, SGP2 -0.200 -0.132
48 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 -0.195 0.007
49 249167_at AT5G42860 unknown -0.195 -0.039
50 253155_at AT4G35720 unknown -0.194 0.025
51 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.194 -0.052
52 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.192 -0.058
53 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.185 0.080
54 261772_at AT1G76240 unknown -0.171 -0.139
55 245076_at AT2G23170 GH3.3 -0.168 -0.201
56 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 -0.166 0.005
57 267409_at AT2G34910 unknown -0.157 -0.019
58 257418_at AT1G30850 RSH4, root hair specific 4 -0.157 0.011
59 254490_at AT4G20320 [CTP synthase family protein] -0.155 -0.076
60 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.151 -0.028
61 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.147 0.033
62 251046_at AT5G02370 [ATP binding microtubule motor family protein] -0.142 -0.087
63 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] -0.141 -0.015
64 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.137 0.044
65 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.137 -0.059
66 251523_at AT3G58975 [expressed protein] -0.136 0.007
67 256518_at AT1G66080 unknown -0.136 0.022