4.0:Information of module
2d red light grown pif1pif3pif4pif5 (pifq) mutant
In comparison with WT(Ler) Rc15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042440 pigment metabolic process BP 4.254e-12
GO:0005982 starch metabolic process BP 5.210e-10
GO:0016108 tetraterpenoid metabolic process BP 8.944e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042445 hormone metabolic process BP 1.534e-05
GO:0042446 hormone biosynthetic process BP 1.933e-05
GO:0008152 metabolic process BP 8.998e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2d red light grown pif1pif3pif4pif5 (pifq) mutant		 Log2 signal ratio
WT(Ler) Rc15
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 1.114 -0.091
2 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.471 0.852
3 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.431 0.533
4 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.396 -0.198
5 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.360 0.658
6 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 0.350 0.240
7 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.340 0.150
8 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.340 0.019
9 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.332 -0.229
10 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 0.320 -0.189
11 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.317 0.034
12 264777_at AT1G08630 THA1, threonine aldolase 1 0.281 0.247
13 246203_at AT4G36610 [alpha/beta-Hydrolases superfamily protein] 0.269 0.298
14 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.264 -0.100
15 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.255 -0.191
16 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.250 0.038
17 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.230 0.330
18 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] 0.230 0.778
19 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.229 0.654
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.227 -0.104
21 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.223 0.033
22 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.221 0.660
23 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] 0.221 0.140
24 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.220 0.687
25 265511_at AT2G05540 [Glycine-rich protein family] 0.210 -0.054
26 256603_at AT3G28270 unknown 0.208 0.470
27 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.200 0.982
28 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.199 -0.740
29 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 0.196 0.401
30 252983_at AT4G37980 ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-1, elicitor-activated gene 3-1 0.192 0.628
31 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.192 0.212
32 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.189 0.299
33 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.186 0.207
34 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 0.184 0.204
35 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.907 0.293
36 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.644 -0.061
37 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.619 0.062
38 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.525 -0.270
39 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.484 0.504
40 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.409 -0.941
41 252763_at AT3G42725 [Putative membrane lipoprotein] -0.405 0.072
42 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.259 -0.534
43 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.223 -0.485
44 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.213 -0.126
45 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.206 -0.288
46 259947_at AT1G71530 [Protein kinase superfamily protein] -0.201 -0.048
47 257951_at AT3G21700 ATSGP2, SGP2 -0.200 -0.031
48 245735_at AT1G73410 ATMYB54, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, MYB54, myb domain protein 54 -0.195 -0.048
49 249167_at AT5G42860 unknown -0.195 -0.492
50 253155_at AT4G35720 unknown -0.194 -0.541
51 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.194 0.004
52 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.192 0.166
53 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.185 -0.256
54 261772_at AT1G76240 unknown -0.171 -0.267
55 245076_at AT2G23170 GH3.3 -0.168 -0.091
56 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 -0.166 -0.125
57 267409_at AT2G34910 unknown -0.157 0.307
58 257418_at AT1G30850 RSH4, root hair specific 4 -0.157 0.047
59 254490_at AT4G20320 [CTP synthase family protein] -0.155 -0.171
60 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.151 0.136
61 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.147 -0.369
62 251046_at AT5G02370 [ATP binding microtubule motor family protein] -0.142 0.161
63 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] -0.141 -0.315
64 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.137 0.007
65 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.137 -0.083
66 251523_at AT3G58975 [expressed protein] -0.136 0.088
67 256518_at AT1G66080 unknown -0.136 0.052