4.0:Information of module
penta Pst DC3000 12hpi
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.795e-27
GO:0098542 defense response to other organism BP 3.625e-26
GO:0009627 systemic acquired resistance BP 3.907e-26
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009311 oligosaccharide metabolic process BP 1.533e-10
GO:0000023 maltose metabolic process BP 1.057e-08
GO:0009250 glucan biosynthetic process BP 1.397e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta Pst DC3000 12hpi		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 1.211 1.214
2 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 0.962 -0.220
3 262010_at AT1G35612 [expressed protein] 0.764 0.040
4 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.752 0.298
5 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.739 -0.196
6 262018_at AT1G35617 unknown 0.594 -0.466
7 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 0.418 0.278
8 246498_at AT5G16230 [Plant stearoyl-acyl-carrier-protein desaturase family protein] 0.407 -0.196
9 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.382 -0.543
10 265705_at AT2G03410 [Mo25 family protein] 0.376 -1.064
11 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.358 -1.008
12 260335_at AT1G74000 SS3, strictosidine synthase 3 0.355 -0.449
13 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 0.353 -0.321
14 256833_at AT3G22910 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.346 0.249
15 251419_at AT3G60470 unknown 0.336 -0.768
16 250038_at AT5G18360 [Disease resistance protein (TIR-NBS-LRR class) family] 0.324 -0.939
17 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.321 0.215
18 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.307 0.102
19 259985_at AT1G76620 unknown 0.295 -0.576
20 260734_at AT1G17600 [Disease resistance protein (TIR-NBS-LRR class) family] 0.281 -0.707
21 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.276 -0.570
22 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.269 -0.912
23 262813_at AT1G11670 [MATE efflux family protein] 0.257 0.362
24 265047_at AT1G51960 IQD27, IQ-domain 27 0.256 -0.580
25 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 0.256 -0.427
26 252014_at AT3G52870 [IQ calmodulin-binding motif family protein] 0.253 -0.445
27 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.250 -0.869
28 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.247 -1.019
29 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.247 -0.853
30 247913_at AT5G57510 unknown 0.244 -0.953
31 251336_at AT3G61190 BAP1, BON association protein 1 0.229 -0.441
32 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.228 -0.746
33 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.225 0.530
34 245932_at AT5G09290 [Inositol monophosphatase family protein] 0.209 -0.586
35 258894_at AT3G05650 AtRLP32, receptor like protein 32, RLP32, receptor like protein 32 0.208 -0.804
36 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.207 0.251
37 252537_at AT3G45710 [Major facilitator superfamily protein] 0.202 -0.486
38 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 0.202 -0.711
39 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.197 -0.876
40 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.195 -0.631
41 260243_at AT1G63720 unknown 0.191 0.629
42 255485_at AT4G02550 unknown 0.189 0.513
43 245401_at AT4G17670 unknown 0.182 0.414
44 245849_at AT5G13520 [peptidase M1 family protein] 0.176 0.341
45 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.171 0.637
46 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.170 -1.092
47 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.861 -0.029
48 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.841 0.034
49 250135_at AT5G15360 unknown -0.812 -0.502
50 255912_at AT1G66960 LUP5 -0.597 -0.199
51 266331_at AT2G01570 RGA, REPRESSOR OF GA, RGA1, REPRESSOR OF GA1-3 1 -0.581 0.948
52 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.512 0.286
53 250036_at AT5G18340 [ARM repeat superfamily protein] -0.476 -0.756
54 261684_at AT1G47400 unknown -0.449 -0.422
55 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.432 -0.697
56 257798_at AT3G15950 NAI2 -0.418 1.174
57 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.370 -1.022
58 258792_at AT3G04640 [glycine-rich protein] -0.337 0.601
59 247212_at AT5G65040 unknown -0.335 -0.782
60 251856_at AT3G54720 AMP1, ALTERED MERISTEM PROGRAM 1, AtAMP1, COP2, CONSTITUTIVE MORPHOGENESIS 2, HPT, HAUPTLING, MFO1, Multifolia, PT, PRIMORDIA TIMING -0.322 -0.048
61 250828_at AT5G05250 unknown -0.314 -0.297
62 263829_at AT2G40435 unknown -0.311 0.501
63 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.293 0.143
64 267472_at AT2G02850 ARPN, plantacyanin -0.291 1.294
65 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 -0.288 -0.230
66 261607_at AT1G49660 AtCXE5, carboxyesterase 5, CXE5, carboxyesterase 5 -0.286 -0.161
67 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b -0.282 -0.711
68 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.280 -0.419
69 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.271 -0.565
70 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 -0.262 0.594
71 248271_at AT5G53420 [CCT motif family protein] -0.259 -0.235
72 249361_at AT5G40540 [Protein kinase superfamily protein] -0.253 0.907
73 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.251 0.627
74 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.249 0.529
75 257673_at AT3G20370 [TRAF-like family protein] -0.247 0.827
76 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 -0.238 -0.045
77 254132_at AT4G24660 ATHB22, HOMEOBOX PROTEIN 22, HB22, homeobox protein 22, MEE68, MATERNAL EFFECT EMBRYO ARREST 68, ZHD2, ZINC FINGER HOMEODOMAIN 2 -0.233 0.069
78 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -0.230 -0.045
79 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.203 0.120
80 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.201 -0.315
81 251183_at AT3G62630 unknown -0.195 0.605
82 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.194 0.693
83 260876_at AT1G21460 AtSWEET1, SWEET1 -0.191 1.246
84 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.189 -0.283
85 250517_at AT5G08260 scpl35, serine carboxypeptidase-like 35 -0.187 0.501
86 262170_at AT1G74940 unknown -0.180 -0.013
87 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.179 -0.215
88 248306_at AT5G52830 ATWRKY27, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY27, WRKY DNA-binding protein 27 -0.179 0.097
89 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] -0.179 -0.386
90 259528_at AT1G12330 unknown -0.178 -0.036
91 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.178 0.562