4.0:Information of module
penta Control
In comparison with NJ15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010035 response to inorganic substance BP 9.374e-10
GO:0050896 response to stimulus BP 6.956e-08
GO:0042221 response to chemical BP 8.681e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009739 response to gibberellin BP 1.388e-07
GO:0007017 microtubule-based process BP 3.093e-06
GO:0007020 microtubule nucleation BP 9.266e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta Control		 Log2 signal ratio
NJ15
1 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 1.455 -0.043
2 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 0.876 -0.059
3 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.814 0.065
4 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.809 -0.082
5 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 0.670 0.012
6 267045_at AT2G34180 ATWL2, WPL4-LIKE 2, CIPK13, CBL-interacting protein kinase 13, SnRK3.7, SNF1-RELATED PROTEIN KINASE 3.7, WL2, WPL4-LIKE 2 0.545 0.006
7 262857_at AT1G14930 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.516 -0.014
8 260608_at AT2G43870 [Pectin lyase-like superfamily protein] 0.482 -0.005
9 247646_at AT5G59990 [CCT motif family protein] 0.479 0.011
10 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.473 -0.017
11 262018_at AT1G35617 unknown 0.460 0.065
12 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.452 -0.126
13 264280_at AT1G61820 BGLU46, beta glucosidase 46 0.451 0.006
14 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] 0.447 0.009
15 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 0.442 -0.033
16 262010_at AT1G35612 [expressed protein] 0.411 -0.047
17 247324_at AT5G64190 unknown 0.400 0.048
18 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.392 0.010
19 250860_at AT5G04770 ATCAT6, ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, CAT6, cationic amino acid transporter 6 0.378 0.039
20 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.373 -0.044
21 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.365 0.037
22 248496_at AT5G50790 AtSWEET10, SWEET10 0.365 0.021
23 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.353 0.128
24 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.352 0.034
25 260881_at AT1G21550 [Calcium-binding EF-hand family protein] 0.340 0.072
26 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.326 -0.090
27 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.322 -0.004
28 258752_at AT3G09520 ATEXO70H4, exocyst subunit exo70 family protein H4, EXO70H4, exocyst subunit exo70 family protein H4 0.322 -0.011
29 249051_at AT5G44390 [FAD-binding Berberine family protein] 0.314 -0.008
30 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.304 -0.035
31 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.299 0.137
32 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.292 -0.052
33 265539_at AT2G15830 unknown 0.286 -0.111
34 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.286 0.223
35 254710_at AT4G18050 ABCB9, ATP-binding cassette B9, PGP9, P-glycoprotein 9 0.276 0.071
36 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 0.273 -0.080
37 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.272 0.159
38 258631_at AT3G07970 QRT2, QUARTET 2 0.271 0.066
39 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.270 0.172
40 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.263 0.004
41 260335_at AT1G74000 SS3, strictosidine synthase 3 0.253 0.055
42 265359_at AT2G16720 ATMYB7, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATY49, MYB7, myb domain protein 7 0.252 0.064
43 250038_at AT5G18360 [Disease resistance protein (TIR-NBS-LRR class) family] 0.239 -0.015
44 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] 0.235 -0.079
45 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.234 0.272
46 252383_at AT3G47780 ABCA7, ATP-binding cassette A7, ATATH6, A. THALIANA ABC2 HOMOLOG 6, ATH6, ABC2 homolog 6 0.225 0.046
47 258707_at AT3G09480 [Histone superfamily protein] 0.223 0.009
48 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 0.222 0.111
49 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.220 0.120
50 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.219 -0.057
51 245148_at AT2G45220 PME17, pectin methylesterase 17 0.218 0.009
52 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.217 0.009
53 250050_at AT5G17790 VAR3, VARIEGATED 3 0.217 -0.032
54 245353_at AT4G16000 unknown 0.217 0.052
55 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.215 0.028
56 259182_at AT3G01750 [Ankyrin repeat family protein] 0.214 0.008
57 261240_at AT1G32940 ATSBT3.5, SBT3.5 0.210 0.026
58 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.210 0.050
59 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.210 0.010
60 262925_at AT1G65730 YSL7, YELLOW STRIPE like 7 0.209 -0.001
61 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.824 -0.001
62 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.809 -0.092
63 267472_at AT2G02850 ARPN, plantacyanin -0.677 -0.038
64 250036_at AT5G18340 [ARM repeat superfamily protein] -0.649 0.059
65 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.619 -0.174
66 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.567 0.038
67 250135_at AT5G15360 unknown -0.559 -0.014
68 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.530 -0.022
69 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 -0.493 -0.022
70 254293_at AT4G23060 IQD22, IQ-domain 22 -0.440 0.020
71 252215_at AT3G50240 KICP-02 -0.428 -0.078
72 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.425 -0.001
73 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 -0.414 -0.043
74 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 -0.390 0.002
75 253749_at AT4G29080 IAA27, indole-3-acetic acid inducible 27, PAP2, phytochrome-associated protein 2 -0.374 -0.030
76 245616_at AT4G14480 [Protein kinase superfamily protein] -0.367 -0.031
77 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.366 0.004
78 262118_at AT1G02850 BGLU11, beta glucosidase 11 -0.360 0.150
79 253286_at AT4G34260 AXY8, ALTERED XYLOGLUCAN 8, FUC95A -0.355 -0.015
80 255621_at AT4G01390 [TRAF-like family protein] -0.347 -0.134
81 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 -0.342 0.037
82 266331_at AT2G01570 RGA, REPRESSOR OF GA, RGA1, REPRESSOR OF GA1-3 1 -0.340 -0.012
83 261224_at AT1G20160 ATSBT5.2 -0.337 0.087
84 258109_at AT3G23640 HGL1, heteroglycan glucosidase 1 -0.335 0.007
85 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E -0.331 -0.010
86 250517_at AT5G08260 scpl35, serine carboxypeptidase-like 35 -0.328 -0.001
87 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.321 0.032
88 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.321 -0.036
89 248306_at AT5G52830 ATWRKY27, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY27, WRKY DNA-binding protein 27 -0.319 -0.075
90 261500_at AT1G28400 unknown -0.315 -0.022
91 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.307 0.000
92 254402_at AT4G21310 unknown -0.306 0.002
93 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.300 -0.021
94 261368_at AT1G53070 [Legume lectin family protein] -0.284 -0.048
95 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein -0.281 -0.075
96 252954_at AT4G38660 [Pathogenesis-related thaumatin superfamily protein] -0.279 -0.025
97 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 -0.279 0.006
98 252077_at AT3G51720 unknown -0.272 -0.008
99 260799_at AT1G78270 AtUGT85A4, UDP-glucosyl transferase 85A4, UGT85A4, UDP-glucosyl transferase 85A4 -0.269 -0.051
100 248613_at AT5G49555 [FAD/NAD(P)-binding oxidoreductase family protein] -0.268 -0.052
101 262230_at AT1G68560 ATXYL1, ALPHA-XYLOSIDASE 1, AXY3, altered xyloglucan 3, TRG1, thermoinhibition resistant germination 1, XYL1, alpha-xylosidase 1 -0.266 -0.015
102 246200_at AT4G37240 unknown -0.261 -0.019
103 266124_at AT2G45080 cycp3;1, cyclin p3;1 -0.260 0.059
104 247218_at AT5G65010 ASN2, asparagine synthetase 2 -0.256 -0.031
105 249955_at AT5G18840 [Major facilitator superfamily protein] -0.252 0.048
106 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.251 0.014
107 255817_at AT2G33330 PDLP3, plasmodesmata-located protein 3 -0.246 -0.059
108 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] -0.244 -0.032
109 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.241 -0.023
110 266500_at AT2G06925 ATSPLA2-ALPHA, PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA -0.240 -0.033
111 261230_at AT1G20010 TUB5, tubulin beta-5 chain -0.235 -0.037
112 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 -0.235 -0.013
113 261203_at AT1G12845 unknown -0.233 0.007
114 254153_at AT4G24450 ATGWD2, GWD3, PWD, phosphoglucan, water dikinase -0.233 -0.025
115 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.231 0.023
116 253911_at AT4G27300 [S-locus lectin protein kinase family protein] -0.231 -0.053
117 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 -0.220 -0.007
118 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 -0.220 -0.006
119 255038_at AT4G09510 A/N-InvI, alkaline/neutral invertase I, CINV2, cytosolic invertase 2 -0.215 -0.060