4.0:Information of module
penta Alternaria 3dpi
In comparison with root endodermis and quiescent center 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0014070 response to organic cyclic compound BP 1.417e-18
GO:0001101 response to acid chemical BP 3.928e-18
GO:0071229 cellular response to acid chemical BP 9.265e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 6.608e-29
GO:0006081 cellular aldehyde metabolic process BP 4.149e-25
GO:0008299 isoprenoid biosynthetic process BP 5.420e-25
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta Alternaria 3dpi		 Log2 signal ratio
root endodermis and quiescent center 40 mM NaCl
1 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 1.119 0.043
2 259286_at AT3G11480 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1.052 -0.029
3 245443_at AT4G16730 TPS02, terpene synthase 02 0.889 0.023
4 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 0.870 -0.003
5 254574_at AT4G19430 unknown 0.834 0.026
6 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.775 -0.004
7 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.748 0.030
8 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.721 0.003
9 262010_at AT1G35612 [expressed protein] 0.717 -0.042
10 258182_at AT3G21500 DXL1, DXS-like 1, DXPS1, 1-deoxy-D-xylulose 5-phosphate synthase 1, DXS2, 1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2 0.716 0.005
11 251456_at AT3G60120 BGLU27, beta glucosidase 27 0.669 0.156
12 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.667 -0.197
13 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.665 0.174
14 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.664 0.014
15 262018_at AT1G35617 unknown 0.653 -0.014
16 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.633 0.127
17 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.632 0.135
18 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.631 -0.050
19 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.624 -0.001
20 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.584 0.407
21 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.573 -0.004
22 249454_at AT5G39520 unknown 0.571 0.053
23 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.570 0.283
24 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.569 -0.048
25 260608_at AT2G43870 [Pectin lyase-like superfamily protein] 0.567 -0.173
26 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.563 -0.024
27 267559_at AT2G45570 CYP76C2, cytochrome P450, family 76, subfamily C, polypeptide 2 0.548 0.048
28 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] 0.548 0.035
29 265984_at AT2G24210 TPS10, terpene synthase 10 0.534 -0.045
30 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.525 -0.000
31 265482_at AT2G15780 [Cupredoxin superfamily protein] 0.525 0.025
32 262047_at AT1G80160 GLYI7, glyoxylase I 7 0.511 0.034
33 263073_at AT2G17500 [Auxin efflux carrier family protein] 0.511 0.047
34 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.510 0.165
35 263402_at AT2G04050 [MATE efflux family protein] 0.509 0.204
36 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 0.509 0.306
37 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.508 0.126
38 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.502 0.048
39 256024_at AT1G58340 BCD1, BUSH-AND-CHLOROTIC-DWARF 1, ZF14, ZRZ, ZRIZI 0.500 0.362
40 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] 0.498 0.032
41 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.479 0.240
42 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.477 -0.203
43 259133_at AT3G05400 [Major facilitator superfamily protein] 0.474 -0.035
44 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 0.471 0.087
45 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.465 -0.004
46 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.464 -0.027
47 259036_at AT3G09220 LAC7, laccase 7 0.462 -0.049
48 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.456 0.343
49 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 0.452 0.041
50 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.448 0.239
51 249154_at AT5G43410 [Integrase-type DNA-binding superfamily protein] 0.442 -0.019
52 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.441 0.061
53 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.436 -0.059
54 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.431 0.214
55 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.424 0.257
56 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 0.419 0.011
57 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.417 0.077
58 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.415 0.246
59 251293_at AT3G61930 unknown 0.414 -0.111
60 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 0.411 0.073
61 254597_at AT4G18980 AtS40-3, AtS40-3 0.410 0.006
62 251019_at AT5G02420 unknown 0.409 -0.108
63 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.409 -0.004
64 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.408 0.429
65 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.407 -0.035
66 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.406 -0.012
67 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.405 0.043
68 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.405 -0.042
69 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.400 -0.042
70 251743_at AT3G55890 [Yippee family putative zinc-binding protein] 0.398 -0.085
71 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.395 0.046
72 265913_at AT2G25625 unknown 0.390 0.122
73 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.384 0.008
74 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.380 0.006
75 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.377 0.373
76 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.376 -0.071
77 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.375 0.042
78 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.372 -0.003
79 251766_at AT3G55910 unknown 0.367 -0.009
80 260335_at AT1G74000 SS3, strictosidine synthase 3 0.364 0.189
81 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.362 -0.031
82 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.362 -0.111
83 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.361 -0.047
84 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.361 0.089
85 249057_at AT5G44480 DUR, DEFECTIVE UGE IN ROOT 0.360 0.079
86 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.934 -0.018
87 250135_at AT5G15360 unknown -0.788 -0.020
88 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.647 -0.002
89 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.614 -0.068
90 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.599 -0.042
91 266331_at AT2G01570 RGA, REPRESSOR OF GA, RGA1, REPRESSOR OF GA1-3 1 -0.552 -0.065
92 261684_at AT1G47400 unknown -0.505 0.035
93 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.497 0.070
94 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.479 0.046
95 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.470 -0.078
96 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.431 0.138
97 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.385 0.049
98 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 -0.364 -0.174
99 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.357 0.161
100 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.356 -0.015
101 250036_at AT5G18340 [ARM repeat superfamily protein] -0.346 0.095
102 260041_at AT1G68780 [RNI-like superfamily protein] -0.343 -0.030
103 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 -0.324 -0.092
104 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.322 -0.126
105 250828_at AT5G05250 unknown -0.317 -0.184
106 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.314 -0.193
107 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.310 0.018
108 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.305 -0.027
109 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.304 -0.206
110 248759_at AT5G47610 [RING/U-box superfamily protein] -0.298 -0.016
111 252215_at AT3G50240 KICP-02 -0.297 -0.000
112 254293_at AT4G23060 IQD22, IQ-domain 22 -0.293 0.120
113 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.292 -0.056
114 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.291 -0.028
115 250980_at AT5G03130 unknown -0.286 -0.021
116 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 -0.277 -0.049
117 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.265 -0.162
118 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.263 -0.145
119 248784_at AT5G47380 unknown -0.263 -0.016
120 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.263 -0.119
121 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.261 -0.003
122 257547_at AT3G13000 unknown -0.257 0.177
123 259375_at AT3G16370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.253 -0.137
124 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.253 0.039
125 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.252 -0.034
126 255294_at AT4G04750 [Major facilitator superfamily protein] -0.252 -0.025
127 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II -0.251 0.004
128 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.250 -0.113
129 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.249 0.015
130 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.249 -0.120
131 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.241 0.024
132 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.240 0.055
133 255817_at AT2G33330 PDLP3, plasmodesmata-located protein 3 -0.239 0.068
134 250696_at AT5G06790 unknown -0.238 -0.069
135 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.234 0.026
136 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.233 0.038
137 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 -0.231 0.061
138 259760_at AT1G77580 unknown -0.231 -0.021
139 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.227 -0.034
140 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.226 0.031
141 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.226 -0.001
142 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.225 -0.045
143 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 -0.225 0.069
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.222 0.026
145 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 -0.221 0.020
146 252971_at AT4G38770 ATPRP4, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, PRP4, proline-rich protein 4 -0.221 0.035
147 252989_at AT4G38420 sks9, SKU5 similar 9 -0.219 0.055
148 261421_at AT1G18840 IQD30, IQ-domain 30 -0.218 -0.089
149 250642_at AT5G07180 ERL2, ERECTA-like 2 -0.217 -0.009
150 245112_at AT2G41540 GPDHC1 -0.217 0.084
151 247288_at AT5G64330 JK218, NPH3, NON-PHOTOTROPIC HYPOCOTYL 3, RPT3, ROOT PHOTOTROPISM 3 -0.217 -0.329
152 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.216 -0.004
153 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.216 0.070
154 249288_at AT5G41050 [Pollen Ole e 1 allergen and extensin family protein] -0.212 -0.015
155 253286_at AT4G34260 AXY8, ALTERED XYLOGLUCAN 8, FUC95A -0.211 -0.072
156 259173_at AT3G03640 BGLU25, beta glucosidase 25, GLUC -0.209 0.278
157 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.208 -0.039
158 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.206 0.063
159 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.205 0.018
160 245616_at AT4G14480 [Protein kinase superfamily protein] -0.205 0.021
161 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 -0.203 -0.135
162 257750_at AT3G18800 unknown -0.202 0.017
163 262969_at AT1G75710 [C2H2-like zinc finger protein] -0.202 0.053
164 249060_at AT5G44560 VPS2.2 -0.202 -0.013
165 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.199 0.001
166 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] -0.195 -0.012
167 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.195 -0.219
168 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 -0.195 -0.116
169 259832_at AT1G69580 [Homeodomain-like superfamily protein] -0.194 -0.114
170 260081_at AT1G78170 unknown -0.193 0.028