4.0:Information of module
penta Alternaria 3dpi
In comparison with WT cotyledons help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0014070 response to organic cyclic compound BP 1.417e-18
GO:0001101 response to acid chemical BP 3.928e-18
GO:0071229 cellular response to acid chemical BP 9.265e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 6.608e-29
GO:0006081 cellular aldehyde metabolic process BP 4.149e-25
GO:0008299 isoprenoid biosynthetic process BP 5.420e-25
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta Alternaria 3dpi		 Log2 signal ratio
WT cotyledons
1 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 1.119 0.367
2 259286_at AT3G11480 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1.052 -1.014
3 245443_at AT4G16730 TPS02, terpene synthase 02 0.889 -1.180
4 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 0.870 0.194
5 254574_at AT4G19430 unknown 0.834 -1.232
6 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.775 -0.402
7 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.748 -0.884
8 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.721 -0.487
9 262010_at AT1G35612 [expressed protein] 0.717 0.300
10 258182_at AT3G21500 DXL1, DXS-like 1, DXPS1, 1-deoxy-D-xylulose 5-phosphate synthase 1, DXS2, 1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2 0.716 -0.498
11 251456_at AT3G60120 BGLU27, beta glucosidase 27 0.669 -1.078
12 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.667 -0.259
13 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.665 -0.905
14 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.664 -0.812
15 262018_at AT1G35617 unknown 0.653 -0.456
16 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.633 0.193
17 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.632 -0.510
18 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.631 -0.972
19 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.624 0.625
20 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.584 -1.043
21 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.573 0.271
22 249454_at AT5G39520 unknown 0.571 -0.498
23 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.570 -0.466
24 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.569 -0.215
25 260608_at AT2G43870 [Pectin lyase-like superfamily protein] 0.567 -0.137
26 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.563 -0.588
27 267559_at AT2G45570 CYP76C2, cytochrome P450, family 76, subfamily C, polypeptide 2 0.548 -0.895
28 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] 0.548 -0.407
29 265984_at AT2G24210 TPS10, terpene synthase 10 0.534 -1.196
30 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.525 -0.283
31 265482_at AT2G15780 [Cupredoxin superfamily protein] 0.525 -0.864
32 262047_at AT1G80160 GLYI7, glyoxylase I 7 0.511 -0.933
33 263073_at AT2G17500 [Auxin efflux carrier family protein] 0.511 -0.614
34 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.510 0.163
35 263402_at AT2G04050 [MATE efflux family protein] 0.509 0.146
36 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 0.509 -1.412
37 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.508 -1.036
38 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.502 -0.310
39 256024_at AT1G58340 BCD1, BUSH-AND-CHLOROTIC-DWARF 1, ZF14, ZRZ, ZRIZI 0.500 -0.596
40 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] 0.498 0.064
41 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.479 -0.092
42 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.477 0.111
43 259133_at AT3G05400 [Major facilitator superfamily protein] 0.474 0.099
44 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 0.471 0.092
45 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.465 -0.626
46 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.464 -0.347
47 259036_at AT3G09220 LAC7, laccase 7 0.462 0.032
48 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.456 -1.055
49 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 0.452 -0.172
50 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.448 -0.158
51 249154_at AT5G43410 [Integrase-type DNA-binding superfamily protein] 0.442 -1.227
52 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.441 -0.968
53 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.436 -0.803
54 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.431 -0.589
55 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.424 -0.665
56 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 0.419 -0.687
57 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.417 -0.319
58 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.415 0.643
59 251293_at AT3G61930 unknown 0.414 -1.033
60 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 0.411 0.422
61 254597_at AT4G18980 AtS40-3, AtS40-3 0.410 -0.399
62 251019_at AT5G02420 unknown 0.409 -0.154
63 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.409 -0.951
64 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.408 -0.288
65 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.407 0.220
66 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.406 -0.751
67 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.405 0.052
68 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.405 -0.535
69 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.400 0.205
70 251743_at AT3G55890 [Yippee family putative zinc-binding protein] 0.398 -1.309
71 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.395 -0.751
72 265913_at AT2G25625 unknown 0.390 -0.169
73 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.384 -0.165
74 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.380 -0.557
75 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.377 -0.989
76 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.376 -0.345
77 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.375 -0.406
78 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.372 -0.515
79 251766_at AT3G55910 unknown 0.367 0.023
80 260335_at AT1G74000 SS3, strictosidine synthase 3 0.364 0.045
81 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.362 0.059
82 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.362 -1.050
83 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.361 -0.515
84 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.361 0.520
85 249057_at AT5G44480 DUR, DEFECTIVE UGE IN ROOT 0.360 -0.442
86 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.934 1.260
87 250135_at AT5G15360 unknown -0.788 -0.397
88 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.647 -0.028
89 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.614 0.548
90 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.599 0.248
91 266331_at AT2G01570 RGA, REPRESSOR OF GA, RGA1, REPRESSOR OF GA1-3 1 -0.552 0.905
92 261684_at AT1G47400 unknown -0.505 0.405
93 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.497 0.065
94 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.479 -0.445
95 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.470 1.217
96 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.431 -0.279
97 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.385 1.416
98 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 -0.364 -0.073
99 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.357 1.221
100 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.356 1.290
101 250036_at AT5G18340 [ARM repeat superfamily protein] -0.346 -0.681
102 260041_at AT1G68780 [RNI-like superfamily protein] -0.343 0.257
103 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 -0.324 0.463
104 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.322 1.381
105 250828_at AT5G05250 unknown -0.317 0.014
106 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.314 -1.277
107 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.310 -0.216
108 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.305 0.854
109 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.304 1.220
110 248759_at AT5G47610 [RING/U-box superfamily protein] -0.298 0.523
111 252215_at AT3G50240 KICP-02 -0.297 -0.541
112 254293_at AT4G23060 IQD22, IQ-domain 22 -0.293 0.531
113 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.292 0.433
114 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.291 -0.231
115 250980_at AT5G03130 unknown -0.286 0.670
116 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 -0.277 1.041
117 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.265 0.896
118 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.263 -0.089
119 248784_at AT5G47380 unknown -0.263 0.711
120 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.263 0.137
121 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.261 0.548
122 257547_at AT3G13000 unknown -0.257 -0.086
123 259375_at AT3G16370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.253 0.557
124 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.253 0.991
125 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.252 1.151
126 255294_at AT4G04750 [Major facilitator superfamily protein] -0.252 0.395
127 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II -0.251 0.560
128 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.250 1.335
129 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.249 0.329
130 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.249 0.353
131 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.241 -0.732
132 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.240 -0.375
133 255817_at AT2G33330 PDLP3, plasmodesmata-located protein 3 -0.239 0.595
134 250696_at AT5G06790 unknown -0.238 -0.442
135 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.234 0.220
136 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.233 0.432
137 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 -0.231 0.156
138 259760_at AT1G77580 unknown -0.231 -0.342
139 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.227 0.586
140 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.226 0.126
141 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.226 0.213
142 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.225 0.868
143 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 -0.225 0.101
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.222 -0.701
145 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 -0.221 -0.109
146 252971_at AT4G38770 ATPRP4, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, PRP4, proline-rich protein 4 -0.221 1.679
147 252989_at AT4G38420 sks9, SKU5 similar 9 -0.219 1.234
148 261421_at AT1G18840 IQD30, IQ-domain 30 -0.218 0.953
149 250642_at AT5G07180 ERL2, ERECTA-like 2 -0.217 -0.299
150 245112_at AT2G41540 GPDHC1 -0.217 0.667
151 247288_at AT5G64330 JK218, NPH3, NON-PHOTOTROPIC HYPOCOTYL 3, RPT3, ROOT PHOTOTROPISM 3 -0.217 0.400
152 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.216 0.045
153 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.216 1.090
154 249288_at AT5G41050 [Pollen Ole e 1 allergen and extensin family protein] -0.212 -0.042
155 253286_at AT4G34260 AXY8, ALTERED XYLOGLUCAN 8, FUC95A -0.211 0.317
156 259173_at AT3G03640 BGLU25, beta glucosidase 25, GLUC -0.209 0.151
157 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.208 1.282
158 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.206 0.230
159 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.205 -0.282
160 245616_at AT4G14480 [Protein kinase superfamily protein] -0.205 0.062
161 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 -0.203 0.929
162 257750_at AT3G18800 unknown -0.202 0.064
163 262969_at AT1G75710 [C2H2-like zinc finger protein] -0.202 0.764
164 249060_at AT5G44560 VPS2.2 -0.202 0.826
165 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.199 0.671
166 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] -0.195 -0.245
167 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.195 -0.579
168 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 -0.195 1.086
169 259832_at AT1G69580 [Homeodomain-like superfamily protein] -0.194 -0.516
170 260081_at AT1G78170 unknown -0.193 0.277