4.0:Information of module
WT NAA 2h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 6.504e-26
GO:0009725 response to hormone BP 2.086e-17
GO:0009719 response to endogenous stimulus BP 1.206e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001708 cell fate specification BP 3.945e-03
GO:0009411 response to UV BP 5.980e-03
GO:0045165 cell fate commitment BP 6.423e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT NAA 2h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg)
1 245076_at AT2G23170 GH3.3 1.412 0.285
2 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.921 -0.319
3 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.920 -0.420
4 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.783 0.287
5 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.705 -0.526
6 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 0.686 0.096
7 247474_at AT5G62280 unknown 0.672 0.027
8 248279_at AT5G52910 ATIM, TIMELESS 0.669 0.594
9 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA 0.638 0.642
10 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 0.633 -0.328
11 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.625 -0.221
12 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.621 -0.547
13 257766_at AT3G23030 IAA2, indole-3-acetic acid inducible 2 0.610 0.434
14 248509_at AT5G50335 unknown 0.602 -0.558
15 257900_at AT3G28420 [Putative membrane lipoprotein] 0.583 0.033
16 248801_at AT5G47370 HAT2 0.570 0.241
17 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 0.562 0.455
18 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.558 -0.961
19 252204_at AT3G50340 unknown 0.546 0.027
20 251575_at AT3G58120 ATBZIP61, BZIP61 0.543 -0.664
21 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.528 -0.661
22 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.522 0.079
23 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 0.513 -0.332
24 256784_at AT3G13674 unknown -0.289 1.446
25 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.278 -0.042
26 262811_at AT1G11700 unknown -0.267 0.303
27 258343_at AT3G22810 [FUNCTIONS IN: phosphoinositide binding] -0.260 -0.710
28 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.259 0.927
29 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.233 -0.335
30 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.223 -0.638
31 250158_at AT5G15190 unknown -0.221 -0.149
32 256093_at AT1G20823 [RING/U-box superfamily protein] -0.203 -0.138
33 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.197 -0.699
34 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.190 0.766
35 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.185 0.706
36 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.177 -0.122
37 251049_at AT5G02430 [Transducin/WD40 repeat-like superfamily protein] -0.171 0.400
38 251725_at AT3G56260 unknown -0.168 0.761
39 264648_at AT1G09080 BIP3, binding protein 3 -0.168 -1.270
40 245411_at AT4G17240 unknown -0.166 0.262
41 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.160 -0.714
42 260903_at AT1G02460 [Pectin lyase-like superfamily protein] -0.160 -0.230
43 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 -0.159 0.955
44 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.148 -0.010
45 246900_at AT5G25620 AtYUC6, YUC6, YUCCA6 -0.146 -0.262