4.0:Information of module
WT Atum 2h
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006520 cellular amino acid metabolic process BP 1.710e-03
GO:0000096 sulfur amino acid metabolic process BP 3.291e-03
GO:0046132 pyrimidine ribonucleoside biosynthetic p... BP 3.631e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001708 cell fate specification BP 1.286e-03
GO:0009813 flavonoid biosynthetic process BP 1.685e-03
GO:0045165 cell fate commitment BP 1.842e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT Atum 2h		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 247216_at AT5G64860 DPE1, disproportionating enzyme 0.252 0.064
2 263548_at AT2G21660 ATGRP7, GLYCINE RICH PROTEIN 7, CCR2, cold, circadian rhythm, and rna binding 2, GR-RBP7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GRP7, GLYCINE-RICH RNA-BINDING PROTEIN 7 0.233 1.802
3 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.212 -0.047
4 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.208 -0.621
5 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 0.200 -0.138
6 264314_at AT1G70420 unknown 0.195 -0.964
7 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.192 -0.685
8 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.188 -1.392
9 264874_at AT1G24240 [Ribosomal protein L19 family protein] 0.168 -0.781
10 258006_at AT3G19400 [Cysteine proteinases superfamily protein] 0.165 -0.087
11 261610_at AT1G49560 [Homeodomain-like superfamily protein] 0.160 -0.027
12 248848_at AT5G46520 VICTR, VARIATION IN COMPOUND TRIGGERED ROOT growth response 0.158 -0.386
13 253581_at AT4G30660 [Low temperature and salt responsive protein family] 0.156 0.407
14 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B 0.156 -0.175
15 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.147 0.628
16 255743_at AT1G25375 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.147 0.541
17 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.144 0.646
18 251853_at AT3G54790 [ARM repeat superfamily protein] 0.142 0.133
19 255232_at AT4G05330 AGD13, ARF-GAP domain 13 0.137 -1.420
20 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] 0.135 -0.162
21 250419_at AT5G11250 [Disease resistance protein (TIR-NBS-LRR class)] 0.132 -0.471
22 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.132 -0.319
23 245254_at AT4G14680 APS3 0.127 0.069
24 245301_at AT4G17190 FPS2, farnesyl diphosphate synthase 2 0.124 0.380
25 254870_at AT4G11900 [S-locus lectin protein kinase family protein] 0.123 -0.531
26 250810_at AT5G05090 [Homeodomain-like superfamily protein] 0.123 -0.635
27 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.122 0.478
28 247313_at AT5G63980 ALX8, ALTERED EXPRESSION OF APX2 8, AtFRY1, ATSAL1, FRY1, FIERY1, HOS2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, RON1, ROTUNDA 1, SAL1, SUPO1, suppressors of PIN1 overexpression 1 0.122 0.874
29 251621_at AT3G57700 [Protein kinase superfamily protein] 0.119 -0.369
30 245502_at AT4G15640 unknown 0.118 -0.089
31 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.113 0.877
32 265338_at AT2G18400 [ribosomal protein L6 family protein] 0.113 0.027
33 265663_at AT2G24290 unknown 0.112 0.595
34 259942_at AT1G71260 ATWHY2, WHIRLY 2, WHY2, WHIRLY 2 0.111 1.307
35 264476_at AT1G77130 GUX3, glucuronic acid substitution of xylan 3, PGSIP2, plant glycogenin-like starch initiation protein 2 0.109 1.047
36 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.108 -0.692
37 247746_at AT5G58970 ATUCP2, uncoupling protein 2, UCP2, uncoupling protein 2 0.107 -0.589
38 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.107 -0.617
39 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] 0.104 0.914
40 247616_at AT5G60260 unknown 0.104 -0.149
41 257193_at AT3G13160 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.104 0.102
42 251927_at AT3G53990 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.103 0.608
43 266601_at AT2G46060 [transmembrane protein-related] 0.102 0.029
44 253199_at AT4G35410 [Clathrin adaptor complex small chain family protein] 0.101 -0.354
45 253553_at AT4G31050 LIP2, octanoyl- transferase 0.100 0.152
46 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.099 0.548
47 259005_at AT3G01930 [Major facilitator superfamily protein] 0.098 -0.068
48 257317_at ATMG01060 ORF107G 0.098 -0.880
49 257751_at AT3G18690 MKS1, MAP kinase substrate 1 0.097 1.204
50 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 0.095 0.010
51 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.095 -0.791
52 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.288 0.602
53 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.287 0.162
54 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.256 -0.561
55 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.245 -0.495
56 258796_at AT3G04630 WDL1, WVD2-like 1 -0.231 0.397
57 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.222 -0.874
58 249837_at AT5G23480 [SWIB/MDM2 domain] -0.217 -0.691
59 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.215 -0.710
60 254773_at AT4G13410 ATCSLA15, CSLA15, CELLULOSE SYNTHASE LIKE A15 -0.213 -0.070
61 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.200 0.138
62 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.192 -0.439
63 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.190 0.204
64 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 -0.190 0.651
65 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.186 -0.645
66 252412_at AT3G47295 unknown -0.185 -0.843
67 264331_at AT1G04130 AtTPR2, TPR2, tetratricopeptide repeat 2 -0.184 -0.457
68 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] -0.173 0.896
69 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.173 -0.012
70 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 -0.169 -0.788
71 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] -0.168 0.327
72 252989_at AT4G38420 sks9, SKU5 similar 9 -0.165 0.609
73 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.163 0.336
74 245411_at AT4G17240 unknown -0.163 0.324
75 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.157 0.501
76 264343_at AT1G11850 unknown -0.156 0.218
77 246144_at AT5G20110 [Dynein light chain type 1 family protein] -0.156 0.143
78 265059_at AT1G52080 AR791 -0.152 0.327
79 251049_at AT5G02430 [Transducin/WD40 repeat-like superfamily protein] -0.151 0.474
80 250036_at AT5G18340 [ARM repeat superfamily protein] -0.150 -0.604
81 245352_at AT4G15490 UGT84A3 -0.150 -0.119
82 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.149 -0.134
83 249729_at AT5G24410 PGL4, 6-phosphogluconolactonase 4 -0.146 0.728
84 253725_at AT4G29340 PRF4, profilin 4 -0.145 -0.578
85 255208_at AT4G07580 [pseudogene] -0.140 -0.049
86 257801_at AT3G18750 ATWNK6, ARABIDOPSIS THALIANA WITH NO K 6, WNK6, with no lysine (K) kinase 6, ZIK5 -0.139 0.682
87 245479_at AT4G16140 [proline-rich family protein] -0.133 0.271
88 266015_at AT2G24190 SDR2, short-chain dehydrogenase/reductase 2 -0.132 1.134
89 254759_at AT4G13180 [NAD(P)-binding Rossmann-fold superfamily protein] -0.132 1.024
90 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.131 -0.599
91 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE -0.129 0.711
92 259083_at AT3G04810 ATNEK2, NIMA-related kinase 2, NEK2, NIMA-related kinase 2 -0.128 0.020
93 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.125 -0.155
94 262003_at AT1G64460 [Protein kinase superfamily protein] -0.123 -0.882
95 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 -0.123 0.248
96 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.122 0.911
97 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 -0.122 0.203
98 256415_at AT3G11210 [SGNH hydrolase-type esterase superfamily protein] -0.120 -0.805
99 253192_at AT4G35370 [Transducin/WD40 repeat-like superfamily protein] -0.116 -1.006
100 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 -0.116 -0.753
101 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 -0.116 0.011