4.0:Information of module
WT Atum 2h
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006520 cellular amino acid metabolic process BP 1.710e-03
GO:0000096 sulfur amino acid metabolic process BP 3.291e-03
GO:0046132 pyrimidine ribonucleoside biosynthetic p... BP 3.631e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001708 cell fate specification BP 1.286e-03
GO:0009813 flavonoid biosynthetic process BP 1.685e-03
GO:0045165 cell fate commitment BP 1.842e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT Atum 2h		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 247216_at AT5G64860 DPE1, disproportionating enzyme 0.252 0.022
2 263548_at AT2G21660 ATGRP7, GLYCINE RICH PROTEIN 7, CCR2, cold, circadian rhythm, and rna binding 2, GR-RBP7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GRP7, GLYCINE-RICH RNA-BINDING PROTEIN 7 0.233 -0.002
3 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.212 -0.097
4 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.208 0.133
5 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 0.200 0.008
6 264314_at AT1G70420 unknown 0.195 -0.009
7 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.192 -0.043
8 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.188 0.007
9 264874_at AT1G24240 [Ribosomal protein L19 family protein] 0.168 0.062
10 258006_at AT3G19400 [Cysteine proteinases superfamily protein] 0.165 0.021
11 261610_at AT1G49560 [Homeodomain-like superfamily protein] 0.160 0.098
12 248848_at AT5G46520 VICTR, VARIATION IN COMPOUND TRIGGERED ROOT growth response 0.158 -0.042
13 253581_at AT4G30660 [Low temperature and salt responsive protein family] 0.156 0.041
14 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B 0.156 -0.064
15 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.147 -0.002
16 255743_at AT1G25375 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.147 -0.014
17 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.144 -0.083
18 251853_at AT3G54790 [ARM repeat superfamily protein] 0.142 -0.049
19 255232_at AT4G05330 AGD13, ARF-GAP domain 13 0.137 -0.003
20 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] 0.135 0.049
21 250419_at AT5G11250 [Disease resistance protein (TIR-NBS-LRR class)] 0.132 -0.036
22 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.132 0.044
23 245254_at AT4G14680 APS3 0.127 -0.009
24 245301_at AT4G17190 FPS2, farnesyl diphosphate synthase 2 0.124 -0.002
25 254870_at AT4G11900 [S-locus lectin protein kinase family protein] 0.123 -0.061
26 250810_at AT5G05090 [Homeodomain-like superfamily protein] 0.123 -0.009
27 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.122 0.004
28 247313_at AT5G63980 ALX8, ALTERED EXPRESSION OF APX2 8, AtFRY1, ATSAL1, FRY1, FIERY1, HOS2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, RON1, ROTUNDA 1, SAL1, SUPO1, suppressors of PIN1 overexpression 1 0.122 0.017
29 251621_at AT3G57700 [Protein kinase superfamily protein] 0.119 0.080
30 245502_at AT4G15640 unknown 0.118 0.000
31 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.113 0.010
32 265338_at AT2G18400 [ribosomal protein L6 family protein] 0.113 0.005
33 265663_at AT2G24290 unknown 0.112 0.040
34 259942_at AT1G71260 ATWHY2, WHIRLY 2, WHY2, WHIRLY 2 0.111 -0.005
35 264476_at AT1G77130 GUX3, glucuronic acid substitution of xylan 3, PGSIP2, plant glycogenin-like starch initiation protein 2 0.109 0.015
36 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.108 0.067
37 247746_at AT5G58970 ATUCP2, uncoupling protein 2, UCP2, uncoupling protein 2 0.107 0.015
38 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.107 -0.010
39 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] 0.104 -0.037
40 247616_at AT5G60260 unknown 0.104 0.017
41 257193_at AT3G13160 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.104 0.011
42 251927_at AT3G53990 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.103 0.046
43 266601_at AT2G46060 [transmembrane protein-related] 0.102 -0.029
44 253199_at AT4G35410 [Clathrin adaptor complex small chain family protein] 0.101 0.068
45 253553_at AT4G31050 LIP2, octanoyl- transferase 0.100 0.036
46 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.099 0.038
47 259005_at AT3G01930 [Major facilitator superfamily protein] 0.098 -0.033
48 257317_at ATMG01060 ORF107G 0.098 -0.001
49 257751_at AT3G18690 MKS1, MAP kinase substrate 1 0.097 0.018
50 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 0.095 0.017
51 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.095 -0.016
52 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.288 0.055
53 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.287 -0.014
54 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.256 -0.027
55 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.245 0.055
56 258796_at AT3G04630 WDL1, WVD2-like 1 -0.231 -0.145
57 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.222 0.020
58 249837_at AT5G23480 [SWIB/MDM2 domain] -0.217 0.066
59 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.215 0.060
60 254773_at AT4G13410 ATCSLA15, CSLA15, CELLULOSE SYNTHASE LIKE A15 -0.213 0.079
61 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.200 0.070
62 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.192 -0.019
63 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.190 0.022
64 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 -0.190 0.041
65 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.186 0.082
66 252412_at AT3G47295 unknown -0.185 0.012
67 264331_at AT1G04130 AtTPR2, TPR2, tetratricopeptide repeat 2 -0.184 -0.028
68 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] -0.173 0.008
69 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.173 0.055
70 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 -0.169 0.011
71 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] -0.168 0.016
72 252989_at AT4G38420 sks9, SKU5 similar 9 -0.165 0.008
73 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.163 0.045
74 245411_at AT4G17240 unknown -0.163 0.029
75 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.157 -0.028
76 264343_at AT1G11850 unknown -0.156 0.057
77 246144_at AT5G20110 [Dynein light chain type 1 family protein] -0.156 -0.003
78 265059_at AT1G52080 AR791 -0.152 -0.064
79 251049_at AT5G02430 [Transducin/WD40 repeat-like superfamily protein] -0.151 -0.020
80 250036_at AT5G18340 [ARM repeat superfamily protein] -0.150 -0.004
81 245352_at AT4G15490 UGT84A3 -0.150 0.050
82 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.149 0.004
83 249729_at AT5G24410 PGL4, 6-phosphogluconolactonase 4 -0.146 0.071
84 253725_at AT4G29340 PRF4, profilin 4 -0.145 0.033
85 255208_at AT4G07580 [pseudogene] -0.140 -0.040
86 257801_at AT3G18750 ATWNK6, ARABIDOPSIS THALIANA WITH NO K 6, WNK6, with no lysine (K) kinase 6, ZIK5 -0.139 -0.055
87 245479_at AT4G16140 [proline-rich family protein] -0.133 0.024
88 266015_at AT2G24190 SDR2, short-chain dehydrogenase/reductase 2 -0.132 0.050
89 254759_at AT4G13180 [NAD(P)-binding Rossmann-fold superfamily protein] -0.132 0.016
90 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.131 0.010
91 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE -0.129 0.030
92 259083_at AT3G04810 ATNEK2, NIMA-related kinase 2, NEK2, NIMA-related kinase 2 -0.128 0.028
93 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.125 0.060
94 262003_at AT1G64460 [Protein kinase superfamily protein] -0.123 0.026
95 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 -0.123 0.027
96 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.122 0.023
97 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 -0.122 -0.017
98 256415_at AT3G11210 [SGNH hydrolase-type esterase superfamily protein] -0.120 0.009
99 253192_at AT4G35370 [Transducin/WD40 repeat-like superfamily protein] -0.116 0.023
100 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 -0.116 0.035
101 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 -0.116 -0.003