4.0:Information of module
pXVE:HA-EDM2-a untreated
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048573 photoperiodism, flowering BP 3.029e-05
GO:0006520 cellular amino acid metabolic process BP 3.646e-05
GO:0009648 photoperiodism BP 4.652e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.658e-23
GO:0010243 response to organonitrogen compound BP 1.576e-22
GO:0002376 immune system process BP 2.171e-22
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pXVE:HA-EDM2-a untreated		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 245532_at AT4G15110 CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3 0.419 1.079
2 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.409 -0.346
3 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase 0.314 -0.033
4 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.301 -0.012
5 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.292 -0.528
6 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] 0.280 -0.455
7 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 0.269 0.234
8 262603_at AT1G15380 GLYI4, glyoxylase I 4 0.262 -1.049
9 266034_at AT2G06005 FIP1, FRIGIDA interacting protein 1 0.252 -0.292
10 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.236 -0.985
11 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.228 -0.855
12 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 0.225 -0.099
13 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.215 0.784
14 248759_at AT5G47610 [RING/U-box superfamily protein] 0.213 -0.174
15 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.210 0.440
16 252237_at AT3G49950 [GRAS family transcription factor] 0.209 -0.386
17 254274_at AT4G22770 AHL2, AT-hook motif nuclear localized protein 2 0.199 -0.065
18 263183_at AT1G05570 ATGSL06, ATGSL6, CALS1, callose synthase 1, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6 0.193 0.294
19 254418_at AT4G21480 STP12, sugar transporter protein 12 0.189 -0.525
20 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 0.186 0.506
21 245341_at AT4G16447 unknown 0.184 0.277
22 253269_at AT4G34140 [D111/G-patch domain-containing protein] 0.179 0.176
23 257852_at AT3G12950 [Trypsin family protein] 0.178 0.680
24 263653_at AT1G04310 ERS2, ethylene response sensor 2 0.175 -0.017
25 250860_at AT5G04770 ATCAT6, ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, CAT6, cationic amino acid transporter 6 0.175 -0.109
26 262396_at AT1G49470 unknown 0.172 1.325
27 261596_at AT1G33080 [MATE efflux family protein] 0.171 -0.243
28 252427_at AT3G47640 PYE, POPEYE 0.159 -0.329
29 258005_at AT3G19390 [Granulin repeat cysteine protease family protein] 0.158 0.163
30 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 0.157 0.597
31 247529_at AT5G61520 [Major facilitator superfamily protein] 0.156 -0.884
32 260462_at AT1G10970 ATZIP4, ZIP4, zinc transporter 4 precursor 0.154 0.747
33 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.152 0.427
34 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.152 -0.545
35 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 0.151 1.146
36 266250_at AT2G27870 [similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1)] 0.149 -1.186
37 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 0.148 0.339
38 248166_at AT5G54520 [Transducin/WD40 repeat-like superfamily protein] 0.146 -0.074
39 252981_at AT4G38260 unknown 0.144 0.974
40 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 0.143 -0.338
41 246275_at AT4G36540 BEE2, BR enhanced expression 2 0.140 -0.238
42 260622_at AT1G07980 NF-YC10, nuclear factor Y, subunit C10 0.139 0.550
43 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 0.137 0.093
44 260592_at AT1G55850 ATCSLE1, CSLE1, cellulose synthase like E1 0.136 0.511
45 264130_at AT1G79160 unknown 0.136 0.069
46 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.132 -0.730
47 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 0.131 0.432
48 250747_at AT5G05900 [UDP-Glycosyltransferase superfamily protein] 0.130 -0.993
49 252187_at AT3G50850 [Putative methyltransferase family protein] 0.130 -0.502
50 262703_at AT1G16510 SAUR41, SMALL AUXIN UPREGULATED 41 0.127 0.517
51 249947_at AT5G19200 TSC10B, TSC10B 0.127 -0.247
52 262407_at AT1G34630 unknown 0.124 1.515
53 265379_at AT2G18340 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.124 -0.303
54 267580_at AT2G41990 unknown 0.121 -0.996
55 246231_at AT4G37080 unknown 0.121 0.502
56 253163_at AT4G35750 [SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein] 0.120 0.272
57 255402_at AT4G03205 hemf2 0.120 -0.212
58 250913_at AT5G03770 AtKdtA, KDTA, KDO transferase A 0.120 -0.238
59 248751_at AT5G47540 [Mo25 family protein] 0.119 -0.162
60 247565_at AT5G61150 VIP4, VERNALIZATION INDEPENDENCE 4 0.119 0.298
61 261968_at AT1G65850 [Disease resistance protein (TIR-NBS-LRR class) family] 0.119 -0.392
62 250868_at AT5G03860 MLS, malate synthase 0.118 1.657
63 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -0.883 -0.122
64 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.767 -0.663
65 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.707 0.567
66 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.689 0.813
67 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.622 0.513
68 249459_at AT5G39580 [Peroxidase superfamily protein] -0.594 0.560
69 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 -0.561 -0.485
70 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -0.540 0.227
71 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.520 0.827
72 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.467 0.177
73 249918_at AT5G19240 [Glycoprotein membrane precursor GPI-anchored] -0.453 0.230
74 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] -0.432 -0.001
75 248686_at AT5G48540 [receptor-like protein kinase-related family protein] -0.427 1.077
76 252377_at AT3G47960 AtNPF2.10, GTR1, GLUCOSINOLATE TRANSPORTER-1, NPF2.10, NRT1/ PTR family 2.10 -0.421 -0.149
77 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 -0.419 1.584
78 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 -0.409 -0.266
79 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D -0.399 0.390
80 252648_at AT3G44630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.392 0.054
81 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] -0.390 -0.377
82 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.384 -0.520
83 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.381 0.416
84 247760_at AT5G59130 [Subtilase family protein] -0.351 0.449
85 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.346 1.038
86 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -0.343 -0.801
87 263800_at AT2G24600 [Ankyrin repeat family protein] -0.334 0.717
88 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 -0.332 0.921
89 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.327 0.530
90 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II -0.326 0.350
91 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 -0.322 -0.211
92 258979_at AT3G09440 [Heat shock protein 70 (Hsp 70) family protein] -0.322 0.720
93 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.315 -0.409
94 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 -0.307 0.575
95 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.292 -0.427
96 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.291 -1.372
97 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.290 0.919
98 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.286 0.171
99 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.282 -0.309
100 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.282 -0.057
101 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] -0.281 -0.752
102 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 -0.279 0.927
103 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.278 -0.219
104 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 -0.278 -0.574
105 246888_at AT5G26270 unknown -0.270 0.325
106 248821_at AT5G47070 [Protein kinase superfamily protein] -0.270 -0.055
107 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 -0.264 -1.090
108 261506_at AT1G71697 ATCK1, choline kinase 1, CK, CHOLINE KINASE, CK1, choline kinase 1 -0.263 0.723
109 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.263 0.848
110 257644_at AT3G25780 AOC3, allene oxide cyclase 3 -0.263 -0.002
111 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 -0.259 -0.359
112 248123_at AT5G54720 [Ankyrin repeat family protein] -0.259 -0.992
113 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] -0.259 0.042
114 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.256 -0.074
115 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.255 0.469
116 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 -0.251 0.902
117 259479_at AT1G19020 unknown -0.250 0.490
118 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.250 -0.005
119 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] -0.250 -0.327
120 253630_at AT4G30490 [AFG1-like ATPase family protein] -0.250 -0.065
121 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.249 0.731
122 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana -0.249 -1.101
123 260025_at AT1G30070 [SGS domain-containing protein] -0.249 0.239