4.0:Information of module
edm2-2 untreated
In comparison with Laer pretreat GA Flg22 1h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.773e-09
GO:0042221 response to chemical BP 1.084e-07
GO:0009725 response to hormone BP 1.353e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0008152 metabolic process BP 1.623e-07
GO:0044699 single-organism process BP 1.724e-07
GO:0071704 organic substance metabolic process BP 2.177e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
edm2-2 untreated		 Log2 signal ratio
Laer pretreat GA Flg22 1h
1 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 0.539 0.067
2 249726_at AT5G35480 unknown 0.517 -0.042
3 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.516 0.120
4 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.506 0.050
5 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.505 0.047
6 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.459 0.036
7 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.433 -0.008
8 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.421 0.065
9 245532_at AT4G15110 CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3 0.404 -0.156
10 263515_at AT2G21640 unknown 0.403 0.077
11 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.390 -0.031
12 248405_at AT5G51480 SKS2, SKU5 similar 2 0.389 0.099
13 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 0.382 0.035
14 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor 0.375 0.145
15 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.366 0.044
16 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.341 -0.164
17 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.334 0.034
18 264635_at AT1G65500 unknown 0.332 0.053
19 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.313 0.556
20 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.311 -0.013
21 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.310 -0.108
22 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 0.309 -0.069
23 248322_at AT5G52760 [Copper transport protein family] 0.291 0.275
24 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 0.275 0.181
25 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 0.269 0.085
26 261567_at AT1G33055 unknown 0.268 -0.069
27 262887_at AT1G14780 [MAC/Perforin domain-containing protein] 0.268 0.104
28 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 0.259 -0.051
29 263402_at AT2G04050 [MATE efflux family protein] 0.253 0.150
30 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.250 -0.260
31 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.240 0.049
32 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.237 -0.498
33 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase 0.236 0.135
34 256188_at AT1G30160 unknown 0.233 0.121
35 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.227 -0.062
36 248394_at AT5G52070 [Agenet domain-containing protein] 0.225 0.109
37 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.225 0.119
38 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.220 0.083
39 265189_at AT1G23840 unknown 0.217 0.059
40 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 0.216 0.062
41 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] 0.214 0.167
42 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.211 -0.231
43 266824_at AT2G22800 HAT9 0.210 0.133
44 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.210 0.212
45 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 0.210 -0.281
46 247529_at AT5G61520 [Major facilitator superfamily protein] 0.189 -0.384
47 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.189 -0.048
48 256664_at AT3G12040 [DNA-3-methyladenine glycosylase (MAG)] 0.188 0.347
49 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.188 0.022
50 259841_at AT1G52200 [PLAC8 family protein] 0.187 0.092
51 261586_at AT1G01640 [BTB/POZ domain-containing protein] 0.180 0.125
52 248759_at AT5G47610 [RING/U-box superfamily protein] 0.179 -0.521
53 258203_at AT3G13950 unknown 0.178 0.191
54 263241_at AT2G16500 ADC1, arginine decarboxylase 1, ARGDC, ARGDC1, SPE1 -0.512 0.042
55 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.374 0.101
56 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.354 0.238
57 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -0.308 0.209
58 246485_at AT5G16080 AtCXE17, carboxyesterase 17, CXE17, carboxyesterase 17 -0.284 0.307
59 249459_at AT5G39580 [Peroxidase superfamily protein] -0.281 0.256
60 252377_at AT3G47960 AtNPF2.10, GTR1, GLUCOSINOLATE TRANSPORTER-1, NPF2.10, NRT1/ PTR family 2.10 -0.264 -0.114
61 261602_at AT1G49630 ATPREP2, presequence protease 2, PREP2, presequence protease 2 -0.261 -0.008
62 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.256 0.098
63 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D -0.245 0.165
64 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.233 0.219
65 254408_at AT4G21390 B120 -0.225 0.027
66 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.224 0.005
67 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 -0.222 0.207
68 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -0.220 -0.122
69 253566_at AT4G31210 [DNA topoisomerase, type IA, core] -0.217 -0.071
70 260206_at AT1G70740 [Protein kinase superfamily protein] -0.209 0.124
71 250279_at AT5G13200 [GRAM domain family protein] -0.209 0.145
72 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.208 0.197
73 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 -0.206 -0.089
74 260477_at AT1G11050 [Protein kinase superfamily protein] -0.206 0.100
75 263629_at AT2G04850 [Auxin-responsive family protein] -0.203 -0.133
76 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 -0.201 0.144
77 264227_at AT1G67500 ATREV3, recovery protein 3, REV3, recovery protein 3 -0.198 0.054
78 258282_at AT3G26910 [hydroxyproline-rich glycoprotein family protein] -0.197 0.052
79 252648_at AT3G44630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.196 0.180
80 267411_at AT2G34930 [disease resistance family protein / LRR family protein] -0.193 0.040
81 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II -0.192 -0.035
82 248961_at AT5G45650 [subtilase family protein] -0.190 -0.488
83 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.186 -0.126
84 259945_at AT1G71460 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.185 -0.211
85 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.182 -0.177
86 263630_at AT2G04845 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.179 0.099
87 262292_at AT1G27595 unknown -0.178 -0.024
88 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.176 -0.341
89 258979_at AT3G09440 [Heat shock protein 70 (Hsp 70) family protein] -0.176 0.040
90 249410_at AT5G40380 CRK42, cysteine-rich RLK (RECEPTOR-like protein kinase) 42 -0.170 -0.147
91 267344_at AT2G44230 unknown -0.169 -0.286
92 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.165 -0.055
93 253643_at AT4G29780 unknown -0.163 0.070
94 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 -0.158 0.225
95 247147_at AT5G65630 GTE7, global transcription factor group E7 -0.158 0.022
96 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.157 -0.040
97 254181_at AT4G23940 ARC1, ACCUMULATION AND REPLICATION OF CHLOROPLASTS 1, FtsHi1, FTSH inactive protease 1 -0.157 -0.230
98 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 -0.157 -0.056
99 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 -0.157 0.289
100 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] -0.157 0.037
101 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.156 0.147
102 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.156 0.264
103 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.155 -0.056
104 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.152 0.069
105 251636_at AT3G57530 ATCPK32, CDPK32, CPK32, calcium-dependent protein kinase 32 -0.152 -0.008