4.0:Information of module
pnp1-1 3h +P
In comparison with Mature callus help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.972e-20
GO:0050896 response to stimulus BP 3.649e-15
GO:0010035 response to inorganic substance BP 4.938e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.629e-30
GO:0019684 photosynthesis, light reaction BP 1.133e-24
GO:0019252 starch biosynthetic process BP 2.243e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pnp1-1 3h +P		 Log2 signal ratio
Mature callus
1 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 1.043 0.528
2 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.853 0.415
3 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.805 0.164
4 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.780 0.240
5 246855_at AT5G26280 [TRAF-like family protein] 0.702 0.078
6 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.680 0.065
7 252136_at AT3G50770 CML41, calmodulin-like 41 0.676 0.275
8 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.660 0.821
9 244970_at ATCG00660 RPL20, ribosomal protein L20 0.652 -0.076
10 250365_at AT5G11410 [Protein kinase superfamily protein] 0.652 0.525
11 244977_at ATCG00730 PETD, photosynthetic electron transfer D 0.650 -0.096
12 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.635 -0.065
13 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.629 0.076
14 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.625 0.389
15 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.621 0.340
16 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.600 0.246
17 263515_at AT2G21640 unknown 0.599 -0.000
18 257673_at AT3G20370 [TRAF-like family protein] 0.598 0.371
19 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.577 -0.031
20 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.575 0.760
21 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.572 -0.042
22 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.569 0.095
23 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.568 0.627
24 262603_at AT1G15380 GLYI4, glyoxylase I 4 0.566 0.317
25 264777_at AT1G08630 THA1, threonine aldolase 1 0.564 -0.490
26 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.559 0.058
27 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.550 0.157
28 263402_at AT2G04050 [MATE efflux family protein] 0.545 -0.069
29 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.540 0.026
30 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.528 0.009
31 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.528 -0.066
32 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] 0.515 0.270
33 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 0.505 0.219
34 245015_at ATCG00490 RBCL 0.494 0.046
35 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.479 -0.198
36 247333_at AT5G63600 ATFLS5, FLS5, flavonol synthase 5 0.476 0.304
37 253332_at AT4G33420 [Peroxidase superfamily protein] 0.473 -0.000
38 256188_at AT1G30160 unknown 0.461 -0.003
39 260527_at AT2G47270 UPB1, UPBEAT1 0.458 -0.412
40 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.443 0.146
41 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.442 0.274
42 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 0.442 0.457
43 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.437 0.094
44 245049_at ATCG00050 RPS16, ribosomal protein S16 0.437 -0.103
45 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 0.434 0.091
46 254200_at AT4G24110 unknown 0.425 0.243
47 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.421 0.035
48 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.418 0.156
49 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.414 0.345
50 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.407 -0.015
51 248260_at AT5G53240 unknown 0.405 0.003
52 246888_at AT5G26270 unknown 0.403 0.061
53 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.401 0.449
54 249955_at AT5G18840 [Major facilitator superfamily protein] 0.399 0.723
55 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.398 -0.048
56 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 0.398 0.105
57 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.394 0.149
58 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.391 0.327
59 265999_at AT2G24100 ASG1, ALTERED SEED GERMINATION 1 0.388 0.033
60 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.377 -0.029
61 264580_at AT1G05340 unknown 0.373 -0.127
62 267178_at AT2G37750 unknown 0.372 0.198
63 244966_at ATCG00600 PETG 0.371 -0.077
64 254287_at AT4G22960 unknown 0.369 0.001
65 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.369 0.106
66 260337_at AT1G69310 ATWRKY57, WRKY57, WRKY DNA-binding protein 57 0.366 0.247
67 256340_at AT1G72070 [Chaperone DnaJ-domain superfamily protein] 0.365 0.219
68 249454_at AT5G39520 unknown 0.362 0.477
69 245523_at AT4G15910 ATDI21, drought-induced 21, DI21, drought-induced 21 0.358 0.074
70 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.357 0.119
71 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.357 0.270
72 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.356 -0.123
73 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.353 0.232
74 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.345 0.188
75 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.341 -0.043
76 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 0.340 -0.051
77 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.335 0.110
78 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.334 0.093
79 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.331 0.319
80 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] 0.331 0.341
81 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.328 0.078
82 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.328 -0.075
83 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.327 0.201
84 254917_at AT4G11350 unknown 0.327 0.046
85 247297_at AT5G64100 [Peroxidase superfamily protein] 0.325 0.093
86 253667_at AT4G30170 [Peroxidase family protein] 0.323 0.648
87 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.320 0.517
88 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.317 0.761
89 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 0.313 0.170
90 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 0.310 -0.080
91 249773_at AT5G24140 SQP2, squalene monooxygenase 2 0.303 -0.015
92 246755_at AT5G27920 [F-box family protein] 0.301 -0.083
93 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.301 0.148
94 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.300 0.271
95 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.299 0.148
96 260522_x_at AT2G41730 unknown 0.297 0.066
97 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.292 0.048
98 264746_at AT1G62300 ATWRKY6, WRKY6 0.291 0.253
99 245003_at ATCG00280 PSBC, photosystem II reaction center protein C 0.291 -0.167
100 256096_at AT1G13650 unknown -0.899 -0.014
101 254746_at AT4G12980 [Auxin-responsive family protein] -0.771 -0.148
102 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.770 -1.283
103 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.712 -1.052
104 266516_at AT2G47880 [Glutaredoxin family protein] -0.684 -0.056
105 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.640 -1.101
106 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.570 0.052
107 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.567 -0.083
108 255957_at AT1G22160 unknown -0.563 -0.091
109 259766_at AT1G64360 unknown -0.559 0.050
110 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.549 0.118
111 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.533 -0.209
112 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.533 -0.050
113 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.512 -0.047
114 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.492 -1.025
115 257793_at AT3G26960 [Pollen Ole e 1 allergen and extensin family protein] -0.485 -0.019
116 263829_at AT2G40435 unknown -0.481 -0.045
117 247760_at AT5G59130 [Subtilase family protein] -0.480 -0.310
118 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.480 -0.760
119 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.469 -0.033
120 250810_at AT5G05090 [Homeodomain-like superfamily protein] -0.465 -0.391
121 257271_at AT3G28007 AtSWEET4, SWEET4 -0.464 -0.037
122 260831_at AT1G06830 [Glutaredoxin family protein] -0.462 -0.012
123 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.453 -0.119
124 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.443 -1.045
125 250732_at AT5G06480 [Immunoglobulin E-set superfamily protein] -0.422 -0.039
126 264909_at AT2G17300 unknown -0.412 -0.272
127 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.411 0.146
128 245088_at AT2G39850 [Subtilisin-like serine endopeptidase family protein] -0.404 -0.084
129 252888_at AT4G39210 APL3 -0.403 -0.251
130 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.402 -0.128
131 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.402 0.014
132 260012_at AT1G67865 unknown -0.400 0.219
133 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 -0.389 -0.276
134 249340_at AT5G41140 [Myosin heavy chain-related protein] -0.387 -0.350
135 263574_at AT2G16990 [Major facilitator superfamily protein] -0.381 -0.062
136 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.380 -0.015
137 260075_at AT1G73700 [MATE efflux family protein] -0.378 -0.017
138 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.376 -0.253
139 265454_at AT2G46530 ARF11, auxin response factor 11 -0.371 0.088
140 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.369 -0.123
141 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.369 -0.102
142 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.368 -0.394
143 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.362 -0.692
144 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.360 -0.216
145 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.354 -0.196
146 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.353 -0.046
147 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.351 -0.315
148 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 -0.349 0.151
149 258196_at AT3G13980 unknown -0.348 -0.313
150 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.348 0.167
151 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.346 0.096
152 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.340 -0.776
153 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.340 -0.022
154 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 -0.337 0.104
155 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.337 -0.075
156 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.334 0.027
157 248539_at AT5G50130 [NAD(P)-binding Rossmann-fold superfamily protein] -0.333 0.456
158 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.332 -0.026
159 250975_at AT5G03050 unknown -0.332 0.174
160 250327_at AT5G12050 unknown -0.332 -0.428
161 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] -0.331 -0.213
162 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.330 -0.251
163 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.326 -0.080
164 256872_at AT3G26490 [Phototropic-responsive NPH3 family protein] -0.326 0.066
165 249046_at AT5G44400 [FAD-binding Berberine family protein] -0.326 0.584
166 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.326 0.150
167 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.323 -0.281
168 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN -0.323 -0.330
169 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.318 -0.056
170 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.314 -0.242
171 260636_at AT1G62430 ATCDS1, CDP-diacylglycerol synthase 1, CDS1, CDP-diacylglycerol synthase 1 -0.313 0.021
172 253165_at AT4G35320 unknown -0.312 -0.316
173 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.311 -0.259
174 264184_at AT1G54790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.307 -0.128
175 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.307 -0.189
176 248540_at AT5G50160 ATFRO8, FERRIC REDUCTION OXIDASE 8, FRO8, ferric reduction oxidase 8 -0.306 0.569
177 255877_at AT2G40460 [Major facilitator superfamily protein] -0.305 0.409
178 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.304 -0.318
179 264314_at AT1G70420 unknown -0.304 -0.006
180 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 -0.304 0.258
181 251299_at AT3G61950 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.303 -0.119
182 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.303 0.185
183 246462_at AT5G16940 [carbon-sulfur lyases] -0.301 0.049
184 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.297 -0.016
185 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.296 0.023
186 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.295 -0.225
187 250566_at AT5G08070 TCP17, TCP domain protein 17 -0.294 0.020
188 261012_at AT1G26600 CLE9, CLAVATA3/ESR-RELATED 9 -0.291 -0.045
189 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.291 -0.247
190 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.289 -0.141
191 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] -0.288 -0.051
192 254662_at AT4G18270 ATTRANS11, ARABIDOPSIS THALIANA TRANSLOCASE 11, TRANS11, translocase 11 -0.287 -0.066
193 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 -0.284 -0.252
194 256873_at AT3G26310 CYP71B35, cytochrome P450, family 71, subfamily B, polypeptide 35 -0.280 -0.118
195 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 -0.278 -0.094
196 249797_at AT5G23750 [Remorin family protein] -0.277 -0.180
197 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana -0.276 -0.005