4.0:Information of module
pnp1-1 3h +P
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.972e-20
GO:0050896 response to stimulus BP 3.649e-15
GO:0010035 response to inorganic substance BP 4.938e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.629e-30
GO:0019684 photosynthesis, light reaction BP 1.133e-24
GO:0019252 starch biosynthetic process BP 2.243e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pnp1-1 3h +P		 Log2 signal ratio
Leafminer damaged seedlings
1 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 1.043 0.373
2 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.853 1.524
3 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.805 1.298
4 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.780 -0.055
5 246855_at AT5G26280 [TRAF-like family protein] 0.702 0.090
6 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.680 0.968
7 252136_at AT3G50770 CML41, calmodulin-like 41 0.676 0.239
8 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.660 0.580
9 244970_at ATCG00660 RPL20, ribosomal protein L20 0.652 -0.026
10 250365_at AT5G11410 [Protein kinase superfamily protein] 0.652 0.474
11 244977_at ATCG00730 PETD, photosynthetic electron transfer D 0.650 -0.026
12 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.635 -0.168
13 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.629 0.053
14 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.625 0.861
15 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.621 0.251
16 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.600 0.491
17 263515_at AT2G21640 unknown 0.599 0.136
18 257673_at AT3G20370 [TRAF-like family protein] 0.598 0.664
19 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.577 -0.139
20 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.575 0.609
21 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.572 0.357
22 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.569 -0.038
23 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.568 0.616
24 262603_at AT1G15380 GLYI4, glyoxylase I 4 0.566 0.469
25 264777_at AT1G08630 THA1, threonine aldolase 1 0.564 0.236
26 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.559 0.595
27 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.550 0.860
28 263402_at AT2G04050 [MATE efflux family protein] 0.545 0.120
29 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.540 0.024
30 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.528 0.697
31 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.528 0.452
32 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] 0.515 0.008
33 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 0.505 0.299
34 245015_at ATCG00490 RBCL 0.494 -0.117
35 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.479 -0.081
36 247333_at AT5G63600 ATFLS5, FLS5, flavonol synthase 5 0.476 0.171
37 253332_at AT4G33420 [Peroxidase superfamily protein] 0.473 0.053
38 256188_at AT1G30160 unknown 0.461 0.081
39 260527_at AT2G47270 UPB1, UPBEAT1 0.458 0.196
40 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.443 0.551
41 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.442 0.552
42 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 0.442 0.294
43 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.437 0.507
44 245049_at ATCG00050 RPS16, ribosomal protein S16 0.437 -0.133
45 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 0.434 0.339
46 254200_at AT4G24110 unknown 0.425 0.395
47 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.421 0.278
48 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.418 0.444
49 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.414 0.609
50 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.407 0.006
51 248260_at AT5G53240 unknown 0.405 -0.065
52 246888_at AT5G26270 unknown 0.403 0.273
53 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.401 0.650
54 249955_at AT5G18840 [Major facilitator superfamily protein] 0.399 -0.053
55 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.398 -0.027
56 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 0.398 0.649
57 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.394 -0.046
58 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.391 0.386
59 265999_at AT2G24100 ASG1, ALTERED SEED GERMINATION 1 0.388 -0.139
60 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.377 -0.319
61 264580_at AT1G05340 unknown 0.373 0.981
62 267178_at AT2G37750 unknown 0.372 0.551
63 244966_at ATCG00600 PETG 0.371 -0.107
64 254287_at AT4G22960 unknown 0.369 0.074
65 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.369 0.063
66 260337_at AT1G69310 ATWRKY57, WRKY57, WRKY DNA-binding protein 57 0.366 0.046
67 256340_at AT1G72070 [Chaperone DnaJ-domain superfamily protein] 0.365 0.149
68 249454_at AT5G39520 unknown 0.362 0.603
69 245523_at AT4G15910 ATDI21, drought-induced 21, DI21, drought-induced 21 0.358 0.189
70 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.357 0.210
71 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.357 0.672
72 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.356 0.581
73 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.353 0.353
74 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.345 0.034
75 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.341 0.105
76 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 0.340 -0.062
77 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.335 0.311
78 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.334 0.778
79 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.331 0.213
80 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] 0.331 0.318
81 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.328 0.347
82 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.328 -0.117
83 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.327 0.231
84 254917_at AT4G11350 unknown 0.327 0.406
85 247297_at AT5G64100 [Peroxidase superfamily protein] 0.325 0.247
86 253667_at AT4G30170 [Peroxidase family protein] 0.323 -0.011
87 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.320 0.748
88 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.317 0.840
89 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 0.313 0.360
90 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 0.310 0.064
91 249773_at AT5G24140 SQP2, squalene monooxygenase 2 0.303 0.009
92 246755_at AT5G27920 [F-box family protein] 0.301 -0.193
93 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.301 0.473
94 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.300 0.655
95 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.299 0.283
96 260522_x_at AT2G41730 unknown 0.297 0.082
97 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.292 0.097
98 264746_at AT1G62300 ATWRKY6, WRKY6 0.291 0.601
99 245003_at ATCG00280 PSBC, photosystem II reaction center protein C 0.291 -0.053
100 256096_at AT1G13650 unknown -0.899 -0.608
101 254746_at AT4G12980 [Auxin-responsive family protein] -0.771 -0.386
102 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.770 -0.736
103 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.712 -0.720
104 266516_at AT2G47880 [Glutaredoxin family protein] -0.684 0.088
105 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.640 -0.508
106 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.570 -0.123
107 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.567 1.005
108 255957_at AT1G22160 unknown -0.563 -0.196
109 259766_at AT1G64360 unknown -0.559 0.209
110 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.549 -0.049
111 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.533 0.312
112 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.533 0.362
113 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.512 -0.046
114 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.492 -0.365
115 257793_at AT3G26960 [Pollen Ole e 1 allergen and extensin family protein] -0.485 -0.564
116 263829_at AT2G40435 unknown -0.481 0.488
117 247760_at AT5G59130 [Subtilase family protein] -0.480 0.115
118 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.480 -0.351
119 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.469 -0.181
120 250810_at AT5G05090 [Homeodomain-like superfamily protein] -0.465 0.157
121 257271_at AT3G28007 AtSWEET4, SWEET4 -0.464 0.605
122 260831_at AT1G06830 [Glutaredoxin family protein] -0.462 -0.212
123 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.453 -0.586
124 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.443 -0.416
125 250732_at AT5G06480 [Immunoglobulin E-set superfamily protein] -0.422 -0.026
126 264909_at AT2G17300 unknown -0.412 -0.537
127 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.411 0.005
128 245088_at AT2G39850 [Subtilisin-like serine endopeptidase family protein] -0.404 -0.071
129 252888_at AT4G39210 APL3 -0.403 -0.222
130 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.402 -0.214
131 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.402 0.288
132 260012_at AT1G67865 unknown -0.400 0.169
133 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 -0.389 -0.044
134 249340_at AT5G41140 [Myosin heavy chain-related protein] -0.387 -0.680
135 263574_at AT2G16990 [Major facilitator superfamily protein] -0.381 -0.027
136 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.380 -0.070
137 260075_at AT1G73700 [MATE efflux family protein] -0.378 0.071
138 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.376 -0.208
139 265454_at AT2G46530 ARF11, auxin response factor 11 -0.371 -0.288
140 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.369 -0.049
141 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.369 0.081
142 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.368 -0.321
143 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.362 -0.188
144 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.360 -0.455
145 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.354 -0.204
146 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.353 -0.201
147 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.351 0.035
148 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 -0.349 -0.233
149 258196_at AT3G13980 unknown -0.348 -0.156
150 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.348 -0.101
151 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.346 -0.064
152 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.340 -0.289
153 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.340 -0.189
154 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 -0.337 -0.147
155 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.337 -0.488
156 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.334 -0.374
157 248539_at AT5G50130 [NAD(P)-binding Rossmann-fold superfamily protein] -0.333 -0.117
158 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.332 -0.342
159 250975_at AT5G03050 unknown -0.332 -0.046
160 250327_at AT5G12050 unknown -0.332 -0.252
161 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] -0.331 -0.394
162 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.330 -0.300
163 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.326 -0.611
164 256872_at AT3G26490 [Phototropic-responsive NPH3 family protein] -0.326 -0.252
165 249046_at AT5G44400 [FAD-binding Berberine family protein] -0.326 0.052
166 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.326 -0.002
167 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.323 -0.167
168 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN -0.323 0.267
169 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.318 -0.176
170 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.314 0.058
171 260636_at AT1G62430 ATCDS1, CDP-diacylglycerol synthase 1, CDS1, CDP-diacylglycerol synthase 1 -0.313 0.209
172 253165_at AT4G35320 unknown -0.312 -0.252
173 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.311 -0.455
174 264184_at AT1G54790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.307 -0.147
175 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.307 -0.085
176 248540_at AT5G50160 ATFRO8, FERRIC REDUCTION OXIDASE 8, FRO8, ferric reduction oxidase 8 -0.306 0.042
177 255877_at AT2G40460 [Major facilitator superfamily protein] -0.305 -0.062
178 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.304 -0.689
179 264314_at AT1G70420 unknown -0.304 0.387
180 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 -0.304 -0.772
181 251299_at AT3G61950 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.303 -0.456
182 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.303 -0.240
183 246462_at AT5G16940 [carbon-sulfur lyases] -0.301 -0.158
184 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.297 0.221
185 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.296 -0.145
186 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.295 -0.442
187 250566_at AT5G08070 TCP17, TCP domain protein 17 -0.294 -0.206
188 261012_at AT1G26600 CLE9, CLAVATA3/ESR-RELATED 9 -0.291 -0.142
189 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.291 -0.517
190 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.289 0.293
191 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] -0.288 -0.193
192 254662_at AT4G18270 ATTRANS11, ARABIDOPSIS THALIANA TRANSLOCASE 11, TRANS11, translocase 11 -0.287 0.355
193 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 -0.284 -0.158
194 256873_at AT3G26310 CYP71B35, cytochrome P450, family 71, subfamily B, polypeptide 35 -0.280 -0.221
195 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 -0.278 -0.107
196 249797_at AT5G23750 [Remorin family protein] -0.277 -0.177
197 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana -0.276 -0.029