4.0:Information of module
dyt1
In comparison with root epidermis and lateral root cap -S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042743 hydrogen peroxide metabolic process BP 3.641e-05
GO:0018205 peptidyl-lysine modification BP 1.075e-04
GO:0018193 peptidyl-amino acid modification BP 2.281e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010208 pollen wall assembly BP 1.496e-06
GO:0010927 cellular component assembly involved in ... BP 1.496e-06
GO:0085029 extracellular matrix assembly BP 1.496e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
dyt1		 Log2 signal ratio
root epidermis and lateral root cap -S
1 266524_at AT2G16960 [ARM repeat superfamily protein] 0.909 0.076
2 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.854 -0.081
3 262010_at AT1G35612 [expressed protein] 0.784 0.310
4 255414_at AT4G03156 [small GTPase-related] 0.697 0.010
5 256987_at AT3G28560 [BCS1 AAA-type ATPase] 0.666 -0.075
6 255257_at AT4G05050 UBQ11, ubiquitin 11 0.580 -0.102
7 260355_at AT1G69180 CRC, CRABS CLAW 0.484 -0.022
8 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 0.478 -0.076
9 264826_at AT1G03410 2A6 0.429 -0.543
10 259656_at AT1G55200 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.413 0.098
11 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.392 -0.164
12 251680_at AT3G57060 [binding] 0.337 -0.162
13 265086_at AT1G03770 ATRING1B, ARABIDOPSIS THALIANA RING 1B, RING1B, RING 1B 0.334 0.102
14 263808_at AT2G04340 unknown 0.302 0.007
15 250078_at AT5G16690 ATORC3, ORC3, origin recognition complex subunit 3 0.300 0.262
16 253859_at AT4G27657 unknown 0.286 -0.169
17 256701_at AT3G52270 [Transcription initiation factor IIF, beta subunit] 0.283 0.037
18 255904_at AT1G17860 [Kunitz family trypsin and protease inhibitor protein] 0.278 -0.205
19 264139_at AT1G78940 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.273 0.174
20 259151_at AT3G10310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] 0.270 -0.183
21 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.269 -0.291
22 266959_at AT2G07690 MCM5, MINICHROMOSOME MAINTENANCE 5 0.268 0.582
23 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 0.264 0.085
24 264240_at AT1G54820 [Protein kinase superfamily protein] 0.256 -0.102
25 245813_at AT1G49920 [MuDR family transposase] 0.256 -0.011
26 261762_at AT1G15510 ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ECB2, EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1 0.246 0.401
27 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.245 -0.019
28 258938_at AT3G10080 [RmlC-like cupins superfamily protein] 0.243 0.120
29 263782_at AT2G46380 unknown 0.242 0.080
30 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 0.241 0.088
31 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.239 0.259
32 245174_at AT2G47500 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] 0.234 0.008
33 249225_at AT5G42140 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.232 -0.252
34 264074_at AT2G10780 [gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 0.231 -0.057
35 254177_at AT4G23860 [PHD finger protein-related] 0.226 0.283
36 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 0.225 -0.132
37 248133_at AT5G54850 unknown 0.222 -0.403
38 248709_at AT5G48470 PRDA1, PEP-Related Development Arrested 1 0.221 0.291
39 252129_at AT3G50890 AtHB28, homeobox protein 28, HB28, homeobox protein 28, ZHD7, ZINC FINGER HOMEODOMAIN 7 0.215 -0.015
40 265348_at AT2G22600 [RNA-binding KH domain-containing protein] 0.212 0.197
41 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.209 -0.056
42 256293_at AT1G69440 AGO7, ARGONAUTE7, ZIP, ZIPPY 0.208 0.173
43 262127_at AT1G52550 unknown 0.208 -0.033
44 255770_at AT1G18560 [BED zinc finger ] 0.207 0.006
45 264884_at AT1G61170 unknown 0.204 -0.025
46 264838_at AT1G03430 AHP5, histidine-containing phosphotransfer factor 5 0.202 -0.073
47 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] 0.201 0.045
48 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] 0.200 0.265
49 263199_at AT1G05590 ATHEX3, BETA-HEXOSAMINIDASE 3, HEXO2, beta-hexosaminidase 2 0.199 0.217
50 254982_at AT4G10470 unknown 0.198 0.043
51 260544_at AT2G43540 unknown 0.195 -0.136
52 262840_at AT1G14900 HMGA, high mobility group A 0.194 -0.280
53 249425_at AT5G39790 5'-AMP-activated protein kinase-related 0.193 0.510
54 247024_at AT5G66985 unknown 0.192 -0.068
55 255782_at AT1G19850 ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24, MP, MONOPTEROS 0.192 -0.137
56 245758_at AT1G32240 KAN2, KANADI 2 0.187 -0.018
57 255842_at AT2G33530 scpl46, serine carboxypeptidase-like 46 0.187 0.172
58 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.185 0.672
59 261336_at AT1G44790 [ChaC-like family protein] 0.185 -0.220
60 259719_at AT1G61070 LCR66, low-molecular-weight cysteine-rich 66, PDF2.4, PLANT DEFENSIN 2.4 -1.333 -0.024
61 260038_at AT1G68875 unknown -1.330 0.080
62 252063_at AT3G51590 LTP12, lipid transfer protein 12 -1.329 -0.046
63 250610_at AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -1.242 -0.107
64 260001_at AT1G67990 ATTSM1, TAPETUM-SPECIFIC METHYLTRANSFERASE 1, TSM1 -1.229 -0.046
65 248350_at AT5G52160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.205 -0.005
66 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] -1.151 -0.301
67 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -1.090 -0.093
68 260621_at AT1G08065 ACA5, alpha carbonic anhydrase 5, ATACA5, ALPHA CARBONIC ANHYDRASE 5 -1.089 -0.107
69 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] -1.032 -0.552
70 252035_at AT3G52160 KCS15, 3-ketoacyl-CoA synthase 15 -1.021 -0.105
71 250576_at AT5G08250 [Cytochrome P450 superfamily protein] -1.020 -0.107
72 257243_at AT3G24230 [Pectate lyase family protein] -1.013 -0.088
73 248368_at AT5G51950 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.989 -0.045
74 266530_at AT2G16910 AMS, ABORTED MICROSPORES -0.977 -0.065
75 248716_at AT5G48210 unknown -0.977 0.006
76 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 -0.903 -0.707
77 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.898 -0.101
78 257841_at AT3G25260 AtNPF4.1, NPF4.1, NRT1/ PTR family 4.1 -0.889 -0.078
79 249881_at AT5G23190 CYP86B1, cytochrome P450, family 86, subfamily B, polypeptide 1 -0.860 -0.075
80 260791_at AT1G06250 [alpha/beta-Hydrolases superfamily protein] -0.833 -0.027
81 264527_at AT1G30760 [FAD-binding Berberine family protein] -0.832 0.324
82 260005_at AT1G67920 unknown -0.823 -0.259
83 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.814 -0.129
84 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 -0.791 -0.001
85 255479_at AT4G02380 AtLEA5, Arabidopsis thaliana late embryogenensis abundant like 5, SAG21, senescence-associated gene 21 -0.781 -0.100
86 256398_at AT3G06100 NIP7;1, NOD26-like intrinsic protein 7;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.768 -0.090
87 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.763 -0.110
88 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.754 -0.174
89 262750_at AT1G28710 [Nucleotide-diphospho-sugar transferase family protein] -0.747 -0.057
90 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.740 0.207
91 258980_at AT3G08900 RGP, RGP3, reversibly glycosylated polypeptide 3 -0.738 -0.021
92 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.735 -0.561
93 261712_at AT1G32780 [GroES-like zinc-binding dehydrogenase family protein] -0.726 -0.057
94 253463_at AT4G32105 [Beta-1,3-N-Acetylglucosaminyltransferase family protein] -0.714 -0.231
95 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.696 -0.226
96 246703_at AT5G28080 WNK9 -0.682 0.215
97 263757_at AT2G21430 [Papain family cysteine protease] -0.663 -0.355
98 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.617 0.054
99 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.615 0.009
100 248051_at AT5G56110 AtMYB103, myb domain protein 103, ATMYB80, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, MS188, MALE STERILE 188, MYB103, myb domain protein 103, MYB80 -0.608 -0.029
101 252462_at AT3G47250 unknown -0.604 0.038
102 248040_at AT5G55970 [RING/U-box superfamily protein] -0.602 0.117
103 261567_at AT1G33055 unknown -0.600 -0.115
104 261673_at AT1G18280 LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3 -0.588 -0.446
105 247304_at AT5G63850 AAP4, amino acid permease 4 -0.564 -0.025
106 248638_at AT5G49070 KCS21, 3-ketoacyl-CoA synthase 21 -0.558 -0.065
107 250604_at AT5G07830 AtGUS2, glucuronidase 2, GUS2, glucuronidase 2 -0.541 0.052
108 254562_at AT4G19230 CYP707A1, cytochrome P450, family 707, subfamily A, polypeptide 1 -0.541 -0.155
109 260415_at AT1G69790 [Protein kinase superfamily protein] -0.533 -0.442
110 261392_at AT1G79780 [Uncharacterised protein family (UPF0497)] -0.531 -0.019
111 259527_at AT1G12600 [UDP-N-acetylglucosamine (UAA) transporter family] -0.520 -0.282
112 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.511 -0.357
113 261396_at AT1G79800 AtENODL7, ENODL7, early nodulin-like protein 7 -0.500 -0.098
114 260233_at AT1G74550 CYP98A9, cytochrome P450, family 98, subfamily A, polypeptide 9 -0.495 -0.103
115 248534_at AT5G50030 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.491 0.003
116 264277_at AT1G60390 PG1, polygalacturonase 1 -0.490 0.262
117 260744_at AT1G15010 unknown -0.483 -0.222