4.0:Information of module
an3-4 leaf primordia
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 2.378e-10
GO:0048511 rhythmic process BP 2.378e-10
GO:0050896 response to stimulus BP 1.170e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009718 anthocyanin-containing compound biosynth... BP 1.367e-13
GO:0001510 RNA methylation BP 1.769e-13
GO:0043248 proteasome assembly BP 4.260e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
an3-4 leaf primordia		 Log2 signal ratio
Leafminer damaged seedlings
1 250135_at AT5G15360 unknown 0.697 -0.011
2 254566_at AT4G19240 unknown 0.673 0.009
3 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.519 0.090
4 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.484 0.114
5 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.477 -0.068
6 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.463 0.186
7 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.463 1.055
8 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.463 0.310
9 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.459 0.180
10 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.443 -0.056
11 253532_at AT4G31570 unknown 0.411 -0.138
12 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.405 0.971
13 256060_at AT1G07050 [CCT motif family protein] 0.392 -0.126
14 264211_at AT1G22770 FB, GI, GIGANTEA 0.390 0.174
15 249174_at AT5G42900 COR27, cold regulated gene 27 0.387 0.150
16 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.387 0.205
17 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.386 0.182
18 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.386 0.172
19 262421_at AT1G50290 unknown 0.383 -0.009
20 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.382 -0.132
21 248810_at AT5G47280 ADR1-L3, ADR1-like 3 0.367 -0.036
22 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.354 0.549
23 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 0.353 0.444
24 257952_at AT3G21770 [Peroxidase superfamily protein] 0.347 -0.040
25 265044_at AT1G03950 VPS2.3, vacuolar protein sorting-associated protein 2.3 0.341 0.135
26 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.335 -0.079
27 265025_at AT1G24575 unknown 0.328 0.240
28 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.327 1.146
29 263133_at AT1G78450 [SOUL heme-binding family protein] 0.327 -0.432
30 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.315 0.928
31 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE 0.313 -0.112
32 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 0.307 -0.446
33 260991_at AT1G12160 [Flavin-binding monooxygenase family protein] 0.305 0.056
34 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.304 0.139
35 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.303 0.395
36 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 0.298 0.071
37 249053_at AT5G44440 [FAD-binding Berberine family protein] 0.282 0.020
38 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.280 0.083
39 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.272 0.156
40 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 0.272 0.118
41 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.266 -0.175
42 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.264 -0.339
43 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.262 0.089
44 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 0.260 -0.211
45 252765_at AT3G42800 unknown 0.257 -0.176
46 253689_at AT4G29770 unknown 0.256 -0.047
47 264280_at AT1G61820 BGLU46, beta glucosidase 46 0.255 0.416
48 252495_at AT3G46770 [AP2/B3-like transcriptional factor family protein] 0.252 -0.103
49 262236_at AT1G48330 unknown 0.247 0.278
50 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.243 -0.096
51 257493_at AT1G48180 unknown 0.243 0.010
52 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.242 -0.044
53 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.239 0.011
54 256120_at AT1G18130 [Class II aaRS and biotin synthetases superfamily protein] 0.238 0.009
55 260396_at AT1G69720 HO3, heme oxygenase 3 0.238 0.125
56 244921_s_at ATMG01000 ORF114 0.232 0.135
57 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.232 0.566
58 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L 0.231 0.042
59 257334_at ATMG01370 ORF111D 0.231 0.079
60 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.224 0.037
61 254596_at AT4G18975 [Pentatricopeptide repeat (PPR) superfamily protein] 0.223 -0.016
62 266613_at AT2G14900 [Gibberellin-regulated family protein] 0.222 -0.180
63 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.218 0.413
64 255345_at AT4G04460 [Saposin-like aspartyl protease family protein] 0.218 -0.054
65 262503_at AT1G21670 [LOCATED IN: cell wall, plant-type cell wall] 0.217 0.247
66 252419_at AT3G47510 unknown 0.214 0.198
67 246168_at AT5G32460 [Transcriptional factor B3 family protein] 0.213 -0.016
68 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 0.213 -0.050
69 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 0.212 0.011
70 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.211 0.041
71 264209_at AT1G22740 ATRABG3B, RAB7, RAB75, RABG3B, RAB GTPase homolog G3B 0.206 -0.277
72 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 0.206 0.293
73 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.205 -0.095
74 257333_at ATMG01360 COX1, cytochrome oxidase 0.205 0.053
75 251372_at AT3G60520 unknown 0.204 0.244
76 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.203 -0.190
77 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.202 -0.077
78 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] 0.201 -0.137
79 250872_at AT5G03960 IQD12, IQ-domain 12 0.200 0.049
80 263688_at AT1G26920 unknown 0.198 0.164
81 260352_at AT1G69295 PDCB4, plasmodesmata callose-binding protein 4 0.197 -0.002
82 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.194 0.462
83 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] 0.192 0.382
84 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.190 0.250
85 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 0.186 0.647
86 259680_at AT1G77690 LAX3, like AUX1 3 0.186 -0.370
87 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] 0.186 0.461
88 245197_at AT1G67800 [Copine (Calcium-dependent phospholipid-binding protein) family] 0.184 0.136
89 257158_at AT3G24360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.179 -0.121
90 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.178 0.184
91 251494_at AT3G59350 [Protein kinase superfamily protein] 0.178 0.402
92 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] 0.175 -0.298
93 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -1.039 -0.006
94 262010_at AT1G35612 [expressed protein] -0.600 -0.027
95 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.552 -0.181
96 258424_at AT3G16750 unknown -0.508 -0.162
97 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.498 0.023
98 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.477 -0.204
99 252659_at AT3G44430 unknown -0.467 -0.076
100 262458_at AT1G11280 [S-locus lectin protein kinase family protein] -0.461 -0.129
101 252648_at AT3G44630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.443 -0.116
102 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.443 -0.155
103 263023_at AT1G23960 unknown -0.437 0.040
104 257579_at AT3G11000 [DCD (Development and Cell Death) domain protein] -0.435 0.020
105 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -0.433 0.749
106 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.421 0.086
107 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] -0.419 -0.277
108 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 -0.418 -0.168
109 264166_at AT1G65370 [TRAF-like family protein] -0.412 -0.099
110 262001_at AT1G33790 [jacalin lectin family protein] -0.411 0.053
111 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 -0.406 -0.100
112 256568_at AT3G19520 unknown -0.399 0.041
113 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.393 -0.143
114 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.375 0.073
115 261942_at AT1G22590 AGL87, AGAMOUS-like 87 -0.369 -0.277
116 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.363 0.514
117 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.362 -0.319
118 258434_at AT3G16770 ATEBP, ethylene-responsive element binding protein, EBP, ethylene-responsive element binding protein, ERF72, ETHYLENE RESPONSE FACTOR 72, RAP2.3, RELATED TO AP2 3 -0.361 0.020
119 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.361 0.224
120 256924_at AT3G29590 AT5MAT -0.355 0.013
121 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] -0.349 0.212
122 246393_at AT1G58150 unknown -0.347 -0.200
123 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.345 -0.358
124 259637_at AT1G52260 ATPDI3, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, ATPDIL1-5, PDI-like 1-5, PDI3, PROTEIN DISULFIDE ISOMERASE 3, PDIL1-5, PDI-like 1-5 -0.341 -0.069
125 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.330 0.107
126 262575_at AT1G15210 ABCG35, ATP-binding cassette G35, ATPDR7, PLEIOTROPIC DRUG RESISTANCE 7, PDR7, pleiotropic drug resistance 7 -0.329 0.076
127 256096_at AT1G13650 unknown -0.328 -0.608
128 264156_at AT1G65280 [DNAJ heat shock N-terminal domain-containing protein] -0.328 -0.028
129 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.325 0.065
130 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.322 -0.079
131 258159_at AT3G17840 RLK902, receptor-like kinase 902 -0.312 -0.505
132 253514_at AT4G31805 POLAR, POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION -0.307 -0.010
133 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 -0.301 -0.032
134 252652_at AT3G44720 ADT4, arogenate dehydratase 4 -0.299 0.272
135 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 -0.296 0.727
136 259110_at AT3G05570 unknown -0.294 0.107
137 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.292 -0.016
138 255260_at AT4G05040 [ankyrin repeat family protein] -0.292 -0.236
139 252432_at AT3G47680 [DNA binding] -0.286 -0.023
140 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 -0.282 0.437
141 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.280 0.020
142 262346_at AT1G63980 [D111/G-patch domain-containing protein] -0.279 0.025
143 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 -0.275 0.381
144 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.265 -0.252
145 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 -0.265 0.029
146 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.262 -0.113
147 247592_at AT5G60780 ATNRT2.3, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, NRT2.3, nitrate transporter 2.3 -0.262 -0.016
148 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.260 -0.864
149 250537_at AT5G08565 [Transcription initiation Spt4-like protein] -0.252 0.200
150 262028_at AT1G35560 AtTCP23, TCP23, TCP domain protein 23 -0.252 -0.132
151 262649_at AT1G14040 [EXS (ERD1/XPR1/SYG1) family protein] -0.249 0.029
152 258027_at AT3G19515 unknown -0.247 -0.197
153 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.244 -0.745
154 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 -0.244 0.967
155 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.243 0.043
156 259686_at AT1G63100 [GRAS family transcription factor] -0.243 -0.010
157 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 -0.241 -0.062
158 254585_at AT4G19500 [nucleoside-triphosphatases] -0.240 -0.215
159 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.238 -0.218
160 246320_at AT1G16560 [Per1-like family protein] -0.238 0.092
161 257013_at AT3G26922 [F-box/RNI-like superfamily protein] -0.237 -0.048
162 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A -0.237 0.291
163 248335_at AT5G52450 [MATE efflux family protein] -0.236 0.099
164 261642_at AT1G27680 APL2, ADPGLC-PPase large subunit -0.234 -0.051
165 265441_at AT2G20870 [cell wall protein precursor, putative] -0.234 0.274
166 252669_at AT3G44100 [MD-2-related lipid recognition domain-containing protein] -0.233 0.060
167 257554_at AT3G24890 ATVAMP728, VAMP728, vesicle-associated membrane protein 728 -0.229 0.002
168 264987_at AT1G27030 unknown -0.227 -0.070
169 262908_at AT1G59900 AT-E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit, E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit -0.226 0.004
170 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.220 -0.402
171 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.218 0.538
172 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] -0.217 0.105
173 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.215 -0.461
174 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] -0.211 -0.043
175 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.208 0.065
176 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.208 -0.383
177 252646_at AT3G44610 [Protein kinase superfamily protein] -0.207 -0.111
178 260502_at AT1G47270 AtTLP6, tubby like protein 6, TLP6, tubby like protein 6 -0.205 -0.125
179 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.205 -0.730
180 245313_at AT4G15420 [Ubiquitin fusion degradation UFD1 family protein] -0.204 0.043
181 258326_at AT3G22760 SOL1 -0.202 -0.312
182 259574_at AT1G35310 MLP168, MLP-like protein 168 -0.201 -0.004
183 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.200 -0.306