4.0:Information of module
ein2-PsmES4326-24hpi
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 8.659e-29
GO:0006739 NADP metabolic process BP 3.944e-27
GO:0019362 pyridine nucleotide metabolic process BP 8.613e-27
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 1.341e-16
GO:0042221 response to chemical BP 1.586e-16
GO:0009723 response to ethylene BP 1.606e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ein2-PsmES4326-24hpi		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 248321_at AT5G52740 [Copper transport protein family] 0.714 -0.152
2 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.605 -0.158
3 264611_at AT1G04680 [Pectin lyase-like superfamily protein] 0.454 0.297
4 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.388 -0.148
5 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.377 0.578
6 263664_at AT1G04250 AXR3, AUXIN RESISTANT 3, IAA17, indole-3-acetic acid inducible 17 0.372 0.216
7 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.370 0.082
8 246439_at AT5G17600 [RING/U-box superfamily protein] 0.368 -0.279
9 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.361 -0.405
10 252309_at AT3G49340 [Cysteine proteinases superfamily protein] 0.355 0.022
11 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 0.352 -0.129
12 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.327 -0.080
13 267535_at AT2G41940 ZFP8, zinc finger protein 8 0.317 -0.394
14 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.315 0.098
15 259854_at AT1G72200 [RING/U-box superfamily protein] 0.311 -0.175
16 251986_at AT3G53310 [AP2/B3-like transcriptional factor family protein] 0.310 -0.178
17 247210_at AT5G65020 ANNAT2, annexin 2, AtANN2 0.291 0.153
18 266393_at AT2G41260 ATM17, M17 0.286 -0.243
19 255438_at AT4G03070 AOP, AOP1, AOP1.1 0.284 -0.232
20 245341_at AT4G16447 unknown 0.276 0.061
21 247467_at AT5G62130 [Per1-like family protein] 0.269 -0.294
22 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] 0.264 0.116
23 262813_at AT1G11670 [MATE efflux family protein] 0.256 0.227
24 264689_at AT1G09900 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.250 -0.192
25 250261_at AT5G13400 [Major facilitator superfamily protein] 0.250 -0.136
26 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] 0.246 0.326
27 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.246 -0.082
28 254145_at AT4G24700 unknown 0.244 -0.829
29 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.243 0.537
30 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR 0.238 -0.130
31 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.234 -0.057
32 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.229 -0.691
33 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 0.228 -0.527
34 250884_at AT5G03940 54CP, 54 CHLOROPLAST PROTEIN, CPSRP54, chloroplast signal recognition particle 54 kDa subunit, FFC, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, SRP54CP, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN 0.225 -0.432
35 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.224 -0.031
36 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.220 0.019
37 256310_at AT1G30360 ERD4, early-responsive to dehydration 4 0.213 -0.198
38 249932_at AT5G22390 unknown 0.211 -0.600
39 259258_at AT3G07670 [Rubisco methyltransferase family protein] 0.209 -0.474
40 246701_at AT5G28020 ATCYSD2, CYSTEINE SYNTHASE D2, CYSD2, cysteine synthase D2 0.207 -0.169
41 260014_at AT1G68010 ATHPR1, HPR, hydroxypyruvate reductase 0.205 -0.563
42 266022_at AT2G05920 [Subtilase family protein] 0.205 -0.019
43 264078_at AT2G28470 BGAL8, beta-galactosidase 8 0.202 -0.466
44 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 0.201 -0.034
45 258357_at AT3G14350 SRF7, STRUBBELIG-receptor family 7 0.200 -0.002
46 262086_at AT1G56050 [GTP-binding protein-related] 0.200 -0.433
47 250300_at AT5G11890 EMB3135, EMBRYO DEFECTIVE 3135 0.197 -0.046
48 247040_at AT5G67150 [HXXXD-type acyl-transferase family protein] 0.196 -0.178
49 261594_at AT1G33240 AT-GTL1, GT2-LIKE 1, ATGTL1, GTL1, GT-2-like 1 0.195 -0.313
50 264057_at AT2G28550 RAP2.7, related to AP2.7, TOE1, TARGET OF EARLY ACTIVATION TAGGED (EAT) 1 0.193 -0.225
51 252890_at AT4G39400 ATBRI1, BIN1, BR INSENSITIVE 1, BRI1, BRASSINOSTEROID INSENSITIVE 1, CBB2, CABBAGE 2, DWF2, DWARF 2 0.193 -0.016
52 245730_at AT1G73470 unknown 0.192 -0.134
53 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] 0.188 -0.398
54 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] 0.187 -0.592
55 248235_at AT5G53860 emb2737, embryo defective 2737, EMB64, EMBRYO DEFECTIVE 64 0.186 -0.170
56 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.185 0.263
57 247563_at AT5G61130 AtPDCB1, PDCB1, plasmodesmata callose-binding protein 1 0.185 -0.070
58 257510_at AT1G55360 unknown 0.184 -0.105
59 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] 0.184 -0.371
60 252391_at AT3G47860 CHL, chloroplastic lipocalin 0.182 -0.304
61 248242_at AT5G53580 AtPLR1, PLR1, pyridoxal reductase 1 0.182 -0.494
62 262809_at AT1G11720 ATSS3, starch synthase 3, SS3, starch synthase 3 0.182 -0.450
63 263737_at AT1G60010 unknown 0.178 0.051
64 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.177 0.322
65 251762_at AT3G55800 SBPASE, sedoheptulose-bisphosphatase 0.175 -0.629
66 263226_at AT1G30690 [Sec14p-like phosphatidylinositol transfer family protein] 0.173 0.017
67 248377_at AT5G51720 At-NEET, NEET, NEET group protein 0.170 -0.928
68 263421_at AT2G17230 EXL5, EXORDIUM like 5 0.170 0.084
69 249464_at AT5G39710 EMB2745, EMBRYO DEFECTIVE 2745 0.169 -0.163
70 259804_at AT1G72160 [Sec14p-like phosphatidylinositol transfer family protein] 0.168 -0.030
71 256255_at AT3G11280 [Duplicated homeodomain-like superfamily protein] 0.168 -0.111
72 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.165 0.157
73 259625_at AT1G42970 GAPB, glyceraldehyde-3-phosphate dehydrogenase B subunit 0.165 -0.624
74 254638_at AT4G18740 [Rho termination factor] 0.164 -0.826
75 252478_at AT3G46540 [ENTH/VHS family protein] 0.164 -0.119
76 261456_at AT1G21050 unknown 0.164 -0.043
77 267057_at AT2G32500 [Stress responsive alpha-beta barrel domain protein] 0.162 -0.549
78 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 0.160 0.089
79 259848_at AT1G72180 [Leucine-rich receptor-like protein kinase family protein] 0.160 -0.126
80 260669_at AT1G19340 [Methyltransferase MT-A70 family protein] 0.159 0.043
81 249693_at AT5G35750 AHK2, histidine kinase 2, HK2, histidine kinase 2 0.158 -0.129
82 256070_at AT1G13730 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] 0.158 0.035
83 251820_at AT3G55040 GSTL2, glutathione transferase lambda 2 0.158 -0.376
84 252821_at AT4G39860 unknown 0.156 0.146
85 266117_at AT2G02170 [Remorin family protein] 0.155 -0.154
86 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] 0.154 -0.173
87 253225_at AT4G35020 ARAC3, RAC-like 3, ATROP6, RAC3, RAC-like 3, RHO1PS, ROP6, RHO-RELATED PROTEIN FROM PLANTS 6 0.154 0.000
88 251519_at AT3G59400 GUN4, GENOMES UNCOUPLED 4 0.153 -0.611
89 266758_at AT2G46920 POL, poltergeist 0.152 0.192
90 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 0.152 -0.241
91 247153_at AT5G65700 BAM1, BARELY ANY MERISTEM 1 0.151 -0.033
92 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] 0.151 0.038
93 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] -0.951 0.142
94 260527_at AT2G47270 UPB1, UPBEAT1 -0.823 1.123
95 248918_at AT5G45890 AtSAG12, SAG12, senescence-associated gene 12 -0.794 -0.051
96 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.763 -0.534
97 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 -0.738 1.210
98 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 -0.734 0.333
99 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.712 0.897
100 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 -0.689 0.659
101 267230_at AT2G44080 ARL, ARGOS-like -0.670 0.312
102 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.652 0.888
103 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 -0.633 0.208
104 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.622 -0.006
105 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 -0.601 -0.184
106 251635_at AT3G57510 ADPG1 -0.599 -0.129
107 262279_at AT1G68630 [PLAC8 family protein] -0.570 -0.061
108 247799_at AT5G58840 [Subtilase family protein] -0.535 0.014
109 258434_at AT3G16770 ATEBP, ethylene-responsive element binding protein, EBP, ethylene-responsive element binding protein, ERF72, ETHYLENE RESPONSE FACTOR 72, RAP2.3, RELATED TO AP2 3 -0.533 0.169
110 259133_at AT3G05400 [Major facilitator superfamily protein] -0.518 -0.081
111 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -0.515 0.488
112 256407_at AT1G66570 ATSUC7, sucrose-proton symporter 7, SUC7, sucrose-proton symporter 7 -0.475 -0.053
113 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 -0.473 0.228
114 247324_at AT5G64190 unknown -0.466 0.311
115 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.449 0.009
116 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.446 0.688
117 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] -0.445 0.078
118 251293_at AT3G61930 unknown -0.442 1.004
119 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 -0.441 0.407
120 254597_at AT4G18980 AtS40-3, AtS40-3 -0.435 0.164
121 263653_at AT1G04310 ERS2, ethylene response sensor 2 -0.431 0.288
122 260278_at AT1G80590 ATWRKY66, WRKY66, WRKY DNA-binding protein 66 -0.426 0.031
123 266273_at AT2G29410 ATMTPB1, MTPB1, metal tolerance protein B1 -0.415 -0.127
124 248564_at AT5G49700 AHL17, AT-hook motif nuclear localized protein 17 -0.415 -0.065
125 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.415 0.671
126 255110_at AT4G08770 Prx37, peroxidase 37 -0.411 1.058
127 254575_at AT4G19460 [UDP-Glycosyltransferase superfamily protein] -0.410 0.713
128 265539_at AT2G15830 unknown -0.409 0.763
129 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] -0.404 0.161
130 266516_at AT2G47880 [Glutaredoxin family protein] -0.404 -0.578
131 247913_at AT5G57510 unknown -0.399 0.054
132 259134_at AT3G05390 unknown -0.397 0.272
133 245545_at AT4G15280 UGT71B5, UDP-glucosyl transferase 71B5 -0.395 0.094
134 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.394 0.063
135 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE -0.389 0.445
136 254630_at AT4G18360 GOX3, glycolate oxidase 3 -0.387 0.721
137 266805_at AT2G30010 TBL45, TRICHOME BIREFRINGENCE-LIKE 45 -0.386 -0.422
138 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.384 0.050
139 251766_at AT3G55910 unknown -0.383 0.188
140 257927_at AT3G23240 ATERF1, ETHYLENE RESPONSE FACTOR 1, ERF1, ethylene response factor 1 -0.380 0.483
141 258100_at AT3G23550 [MATE efflux family protein] -0.378 0.088
142 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.377 0.518
143 253837_at AT4G27850 [Glycine-rich protein family] -0.376 -0.008
144 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 -0.375 0.761
145 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.373 0.587
146 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.357 -0.058
147 250443_at AT5G10520 RBK1, ROP binding protein kinases 1 -0.356 0.161
148 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 -0.352 0.014
149 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.347 0.295
150 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 -0.345 0.472
151 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.345 0.625
152 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 -0.344 0.096
153 265711_at AT2G03360 [Glycosyltransferase family 61 protein] -0.342 0.230
154 263475_at AT2G31945 unknown -0.342 0.657
155 261429_at AT1G18860 ATWRKY61, WRKY DNA-BINDING PROTEIN 61, WRKY61, WRKY DNA-binding protein 61 -0.341 0.073
156 258925_at AT3G10420 SPD1, SEEDLING PLASTID DEVELOPMENT 1 -0.336 -0.102
157 251743_at AT3G55890 [Yippee family putative zinc-binding protein] -0.336 0.364
158 251591_at AT3G57680 [Peptidase S41 family protein] -0.335 -0.116
159 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] -0.332 0.696
160 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.326 0.122
161 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -0.324 0.191
162 258971_at AT3G01990 ACR6, ACT domain repeat 6 -0.320 -0.275
163 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] -0.317 -0.076
164 250928_at AT5G03280 ATEIN2, CKR1, CYTOKININ RESISTANT 1, EIN2, ETHYLENE INSENSITIVE 2, ERA3, ENHANCED RESPONSE TO ABA3, ORE2, ORESARA 2, ORE3, ORESARA 3, PIR2 -0.313 0.085
165 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.311 0.095
166 246183_at AT5G20940 [Glycosyl hydrolase family protein] -0.308 0.043
167 261545_at AT1G63530 unknown -0.306 0.159
168 260406_at AT1G69920 ATGSTU12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, GSTU12, glutathione S-transferase TAU 12 -0.304 0.506
169 260543_at AT2G43330 ATINT1, INOSITOL TRANSPORTER 1, INT1, inositol transporter 1 -0.303 -0.143
170 260561_at AT2G43580 [Chitinase family protein] -0.303 0.137
171 248777_at AT5G47920 unknown -0.302 0.575
172 259596_at AT1G28130 GH3.17 -0.302 0.135
173 247136_at AT5G66170 STR18, sulfurtransferase 18 -0.300 0.712
174 253274_at AT4G34200 EDA9, embryo sac development arrest 9, PGDH1, phosphoglycerate dehydrogenase 1 -0.294 0.088
175 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.291 0.356
176 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] -0.290 0.588
177 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.290 -0.192
178 257636_at AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 -0.290 -0.208
179 263931_at AT2G36220 unknown -0.288 0.255
180 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.287 -0.159
181 254632_at AT4G18630 unknown -0.287 0.139
182 251106_at AT5G01500 TAAC, thylakoid ATP/ADP carrier -0.283 0.158
183 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.281 0.306