4.0:Information of module
250uM KNO3 20min shoots
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 1.440e-05
GO:1901700 response to oxygen-containing compound BP 1.186e-04
GO:0001101 response to acid chemical BP 1.345e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010582 floral meristem determinacy BP 3.520e-03
GO:0010022 meristem determinacy BP 4.277e-03
GO:0015696 ammonium transport BP 1.021e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
250uM KNO3 20min shoots		 Log2 signal ratio
bri1-116
1 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.908 0.002
2 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.904 0.010
3 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.848 0.091
4 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.785 0.165
5 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.756 -0.089
6 259015_at AT3G07350 unknown 0.582 0.223
7 262284_at AT1G68670 [myb-like transcription factor family protein] 0.554 -0.001
8 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.537 0.124
9 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.531 -0.071
10 247754_at AT5G59080 unknown 0.519 -0.107
11 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.517 0.110
12 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.503 -0.117
13 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.494 0.079
14 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.462 0.026
15 255734_at AT1G25550 [myb-like transcription factor family protein] 0.445 0.059
16 245977_at AT5G13110 G6PD2, glucose-6-phosphate dehydrogenase 2 0.413 -0.016
17 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.402 0.021
18 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.399 0.090
19 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.393 0.061
20 246981_at AT5G04840 [bZIP protein] 0.388 0.048
21 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.387 0.144
22 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.376 -0.381
23 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.339 0.110
24 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.325 0.009
25 248253_at AT5G53290 CRF3, cytokinin response factor 3 0.324 -0.099
26 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 0.323 -0.000
27 256528_at AT1G66140 ZFP4, zinc finger protein 4 0.305 0.092
28 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.300 0.048
29 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 0.294 0.147
30 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.291 0.050
31 260771_at AT1G49160 WNK7 0.286 0.076
32 248125_at AT5G54740 SESA5, seed storage albumin 5 0.285 0.002
33 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 0.283 -0.093
34 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.271 0.054
35 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.270 0.143
36 249359_at AT5G40470 [RNI-like superfamily protein] 0.263 -0.022
37 245616_at AT4G14480 [Protein kinase superfamily protein] 0.261 0.189
38 260325_at AT1G63940 MDAR6, monodehydroascorbate reductase 6 0.243 0.095
39 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.210 0.093
40 262323_at AT1G64190 [6-phosphogluconate dehydrogenase family protein] 0.207 0.065
41 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 0.203 0.012
42 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 0.200 -0.088
43 250230_at AT5G13900 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.192 -0.070
44 261195_at AT1G12820 AFB3, auxin signaling F-box 3 0.183 0.038
45 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 0.180 -0.294
46 252407_at AT3G47520 MDH, malate dehydrogenase, pNAD-MDH, plastidic NAD-dependent malate dehydrogenase 0.178 0.122
47 261193_at AT1G32920 unknown 0.164 0.022
48 263731_at AT1G59970 [Matrixin family protein] 0.163 -0.113
49 248205_at AT5G54300 unknown -0.203 0.095
50 260561_at AT2G43580 [Chitinase family protein] -0.164 0.068
51 255271_at AT4G05260 [Ubiquitin-like superfamily protein] -0.158 0.039
52 247649_at AT5G60030 unknown -0.143 0.125
53 264583_at AT1G05170 [Galactosyltransferase family protein] -0.141 -0.339
54 261575_at AT1G01130 unknown -0.139 -0.022
55 263291_at AT2G10920 unknown -0.137 0.110
56 267032_at AT2G38490 CIPK22, CBL-interacting protein kinase 22, SnRK3.19, SNF1-RELATED PROTEIN KINASE 3.19 -0.135 -0.035
57 260395_at AT1G69780 ATHB13 -0.133 -0.012
58 246001_at AT5G20790 unknown -0.132 -0.036
59 265862_at AT2G01780 [Curculin-like (mannose-binding) lectin family protein] -0.129 0.133
60 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.123 0.046
61 256562_at AT3G29775 [copia-like retrotransposon family, has a 2.8e-246 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.122 0.099
62 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] -0.119 0.010
63 261247_at AT1G20070 unknown -0.117 -0.250
64 260327_at AT1G63840 [RING/U-box superfamily protein] -0.113 -0.159
65 258367_at AT3G14370 WAG2 -0.113 -0.457
66 249511_at AT5G38500 [FUNCTIONS IN: DNA binding] -0.110 -0.006
67 262384_at AT1G72950 [Disease resistance protein (TIR-NBS class)] -0.104 0.018
68 266619_at AT2G35460 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.103 0.058
69 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] -0.100 0.074
70 261024_at AT1G12190 [F-box and associated interaction domains-containing protein] -0.100 0.069
71 261812_at AT1G08270 unknown -0.099 0.040
72 258021_at AT3G19380 PUB25, plant U-box 25 -0.097 0.197
73 262996_at AT1G54440 [Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain] -0.095 0.102
74 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] -0.095 0.032
75 264181_at AT1G65350 UBQ13, ubiquitin 13 -0.094 0.201
76 258192_at AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.094 0.080
77 258012_at AT3G19310 [PLC-like phosphodiesterases superfamily protein] -0.093 -0.015
78 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.092 -0.386
79 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT -0.091 0.047
80 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.088 0.100
81 245419_at AT4G17380 ATMSH4, ARABIDOPSIS MUTS HOMOLOG 4, MSH4, MUTS HOMOLOG 4, MSH4, MUTS-like protein 4 -0.088 -0.028
82 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.088 0.063
83 246125_at AT5G19875 unknown -0.087 0.018
84 267557_at AT2G32710 ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, ICK7, INTERACTORS OF CDC2 KINASE 7, KRP4, KRP4, KIP-RELATED PROTEIN 4 -0.087 0.032
85 259086_at AT3G04990 unknown -0.087 0.001
86 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 -0.087 -0.163
87 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 -0.086 -0.055
88 255772_at AT1G18530 [EF hand calcium-binding protein family] -0.086 0.025
89 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.086 0.024
90 251088_at AT5G01480 [Cysteine/Histidine-rich C1 domain family protein] -0.086 -0.046
91 248661_at AT5G48670 AGL80, AGAMOUS-like 80, FEM111 -0.086 -0.002
92 263423_at AT2G31700 unknown -0.085 -0.002
93 245107_at AT2G41690 AT-HSFB3, heat shock transcription factor B3, HSFB3, HEAT SHOCK TRANSCRIPTION FACTOR B3, HSFB3, heat shock transcription factor B3 -0.085 0.006
94 259617_at AT1G47970 unknown -0.083 -0.030
95 246332_at AT3G44830 [Lecithin:cholesterol acyltransferase family protein] -0.083 0.095