4.0:Information of module
250uM KNO3 20min shoots
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 1.440e-05
GO:1901700 response to oxygen-containing compound BP 1.186e-04
GO:0001101 response to acid chemical BP 1.345e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010582 floral meristem determinacy BP 3.520e-03
GO:0010022 meristem determinacy BP 4.277e-03
GO:0015696 ammonium transport BP 1.021e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
250uM KNO3 20min shoots		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.908 0.933
2 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.904 0.127
3 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.848 -0.707
4 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.785 0.620
5 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.756 0.887
6 259015_at AT3G07350 unknown 0.582 -0.384
7 262284_at AT1G68670 [myb-like transcription factor family protein] 0.554 -0.185
8 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.537 0.608
9 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.531 0.054
10 247754_at AT5G59080 unknown 0.519 -0.198
11 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.517 0.509
12 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.503 0.714
13 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.494 1.427
14 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.462 -0.099
15 255734_at AT1G25550 [myb-like transcription factor family protein] 0.445 -0.361
16 245977_at AT5G13110 G6PD2, glucose-6-phosphate dehydrogenase 2 0.413 -0.227
17 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.402 1.231
18 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.399 -0.533
19 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.393 -0.394
20 246981_at AT5G04840 [bZIP protein] 0.388 -0.169
21 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.387 0.498
22 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.376 -0.819
23 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.339 0.174
24 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.325 0.028
25 248253_at AT5G53290 CRF3, cytokinin response factor 3 0.324 0.942
26 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 0.323 0.048
27 256528_at AT1G66140 ZFP4, zinc finger protein 4 0.305 -0.533
28 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.300 0.373
29 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 0.294 -0.421
30 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.291 0.922
31 260771_at AT1G49160 WNK7 0.286 -1.255
32 248125_at AT5G54740 SESA5, seed storage albumin 5 0.285 -0.006
33 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 0.283 -0.397
34 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.271 -0.136
35 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.270 0.373
36 249359_at AT5G40470 [RNI-like superfamily protein] 0.263 -0.421
37 245616_at AT4G14480 [Protein kinase superfamily protein] 0.261 -0.528
38 260325_at AT1G63940 MDAR6, monodehydroascorbate reductase 6 0.243 1.323
39 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.210 -0.123
40 262323_at AT1G64190 [6-phosphogluconate dehydrogenase family protein] 0.207 0.655
41 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 0.203 -0.926
42 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 0.200 -0.314
43 250230_at AT5G13900 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.192 -1.167
44 261195_at AT1G12820 AFB3, auxin signaling F-box 3 0.183 -0.127
45 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 0.180 -0.062
46 252407_at AT3G47520 MDH, malate dehydrogenase, pNAD-MDH, plastidic NAD-dependent malate dehydrogenase 0.178 0.641
47 261193_at AT1G32920 unknown 0.164 0.488
48 263731_at AT1G59970 [Matrixin family protein] 0.163 0.965
49 248205_at AT5G54300 unknown -0.203 0.820
50 260561_at AT2G43580 [Chitinase family protein] -0.164 -0.468
51 255271_at AT4G05260 [Ubiquitin-like superfamily protein] -0.158 -0.367
52 247649_at AT5G60030 unknown -0.143 0.420
53 264583_at AT1G05170 [Galactosyltransferase family protein] -0.141 -0.086
54 261575_at AT1G01130 unknown -0.139 0.280
55 263291_at AT2G10920 unknown -0.137 -0.005
56 267032_at AT2G38490 CIPK22, CBL-interacting protein kinase 22, SnRK3.19, SNF1-RELATED PROTEIN KINASE 3.19 -0.135 -0.451
57 260395_at AT1G69780 ATHB13 -0.133 -0.186
58 246001_at AT5G20790 unknown -0.132 1.230
59 265862_at AT2G01780 [Curculin-like (mannose-binding) lectin family protein] -0.129 -0.446
60 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.123 -0.449
61 256562_at AT3G29775 [copia-like retrotransposon family, has a 2.8e-246 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.122 -0.963
62 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] -0.119 -0.020
63 261247_at AT1G20070 unknown -0.117 -0.094
64 260327_at AT1G63840 [RING/U-box superfamily protein] -0.113 0.095
65 258367_at AT3G14370 WAG2 -0.113 -0.059
66 249511_at AT5G38500 [FUNCTIONS IN: DNA binding] -0.110 -0.349
67 262384_at AT1G72950 [Disease resistance protein (TIR-NBS class)] -0.104 -0.824
68 266619_at AT2G35460 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.103 -0.856
69 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] -0.100 -0.032
70 261024_at AT1G12190 [F-box and associated interaction domains-containing protein] -0.100 -1.360
71 261812_at AT1G08270 unknown -0.099 -0.004
72 258021_at AT3G19380 PUB25, plant U-box 25 -0.097 -0.357
73 262996_at AT1G54440 [Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain] -0.095 0.920
74 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] -0.095 -0.066
75 264181_at AT1G65350 UBQ13, ubiquitin 13 -0.094 -0.457
76 258192_at AT3G29110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.094 0.236
77 258012_at AT3G19310 [PLC-like phosphodiesterases superfamily protein] -0.093 -1.087
78 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.092 0.517
79 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT -0.091 -0.166
80 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.088 0.459
81 245419_at AT4G17380 ATMSH4, ARABIDOPSIS MUTS HOMOLOG 4, MSH4, MUTS HOMOLOG 4, MSH4, MUTS-like protein 4 -0.088 -0.210
82 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.088 -0.062
83 246125_at AT5G19875 unknown -0.087 -0.673
84 267557_at AT2G32710 ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, ICK7, INTERACTORS OF CDC2 KINASE 7, KRP4, KRP4, KIP-RELATED PROTEIN 4 -0.087 -0.400
85 259086_at AT3G04990 unknown -0.087 -1.631
86 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 -0.087 0.393
87 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 -0.086 -0.426
88 255772_at AT1G18530 [EF hand calcium-binding protein family] -0.086 -0.259
89 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.086 0.054
90 251088_at AT5G01480 [Cysteine/Histidine-rich C1 domain family protein] -0.086 -0.625
91 248661_at AT5G48670 AGL80, AGAMOUS-like 80, FEM111 -0.086 -0.613
92 263423_at AT2G31700 unknown -0.085 -1.526
93 245107_at AT2G41690 AT-HSFB3, heat shock transcription factor B3, HSFB3, HEAT SHOCK TRANSCRIPTION FACTOR B3, HSFB3, heat shock transcription factor B3 -0.085 -0.690
94 259617_at AT1G47970 unknown -0.083 -0.083
95 246332_at AT3G44830 [Lecithin:cholesterol acyltransferase family protein] -0.083 0.290