4.0:Information of module
AtHDA6(rts1-1) rts1-5
In comparison with Total RNA 35S:AtCSP1-FH1 cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009692 ethylene metabolic process BP 1.190e-03
GO:0009693 ethylene biosynthetic process BP 1.190e-03
GO:0043449 cellular alkene metabolic process BP 1.190e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006995 cellular response to nitrogen starvation BP 6.652e-04
GO:0009749 response to glucose BP 1.670e-03
GO:0006664 glycolipid metabolic process BP 1.752e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
AtHDA6(rts1-1) rts1-5		 Log2 signal ratio
Total RNA 35S:AtCSP1-FH1 cold
1 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.623 0.011
2 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.458 -0.012
3 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 0.377 0.050
4 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.360 0.107
5 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.342 -0.066
6 256569_at AT3G19550 unknown 0.272 -0.008
7 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.259 0.051
8 260627_at AT1G62310 [transcription factor jumonji (jmjC) domain-containing protein] 0.243 -0.086
9 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.241 -0.034
10 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.240 -0.004
11 253910_at AT4G27290 [S-locus lectin protein kinase family protein] 0.238 -0.041
12 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.237 0.078
13 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 0.235 -0.022
14 266968_at AT2G39360 [Protein kinase superfamily protein] 0.229 -0.095
15 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] 0.209 -0.016
16 248392_at AT5G52050 [MATE efflux family protein] 0.201 -0.003
17 263133_at AT1G78450 [SOUL heme-binding family protein] 0.196 0.037
18 262552_at AT1G31350 KUF1, KAR-UP F-box 1 0.195 -0.065
19 260909_at AT1G02670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.193 -0.001
20 247619_at AT5G60290 unknown 0.193 0.064
21 261924_at AT1G22550 [Major facilitator superfamily protein] 0.192 -0.049
22 245477_at AT4G16110 ARR2, response regulator 2, RR2, response regulator 2 0.189 -0.114
23 256332_at AT1G76890 AT-GT2, GT2 0.187 -0.018
24 246397_at AT1G58190 AtRLP9, receptor like protein 9, RLP9, receptor like protein 9 0.182 -0.046
25 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.175 -0.111
26 248205_at AT5G54300 unknown 0.171 0.025
27 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.165 0.017
28 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 0.162 -0.073
29 255037_at AT4G09460 AtMYB6, myb domain protein 6, MYB6, myb domain protein 6 0.160 -0.053
30 256674_at AT3G52360 unknown 0.157 0.037
31 264519_at AT1G10000 [Ribonuclease H-like superfamily protein] 0.156 -0.043
32 260970_at AT1G53640 unknown 0.156 0.047
33 266118_at AT2G02130 LCR68, low-molecular-weight cysteine-rich 68, PDF2.3 0.154 0.008
34 259853_at AT1G72300 PSY1R, PSY1 receptor 0.151 -0.110
35 260641_at AT1G53200 unknown 0.149 -0.036
36 252298_at AT3G49060 [U-box domain-containing protein kinase family protein] 0.149 -0.059
37 264663_at AT1G09970 LRR XI-23, RLK7, receptor-like kinase 7 0.149 0.003
38 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.146 0.010
39 246524_at AT5G15860 ATPCME, prenylcysteine methylesterase, ICME, Isoprenylcysteine methylesterase, PCME, prenylcysteine methylesterase 0.143 0.005
40 267225_at AT2G44000 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.141 -0.018
41 267581_at AT2G41980 [Protein with RING/U-box and TRAF-like domains] 0.141 -0.074
42 260770_at AT1G49200 [RING/U-box superfamily protein] 0.140 -0.046
43 250084_at AT5G17240 SDG40, SET domain group 40 0.138 -0.033
44 248135_at AT5G54890 mCSF2, mitochondrial CAF-like splicing factor 2 0.135 -0.043
45 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 0.134 -0.032
46 252144_at AT3G51190 [Ribosomal protein L2 family] 0.132 -0.028
47 267632_at AT2G42160 BRIZ1, BRAP2 RING ZnF UBP domain-containing protein 1 0.130 -0.004
48 252979_at AT4G38225 unknown 0.129 -0.017
49 248949_at AT5G45570 [Ulp1 protease family protein] -1.351 -0.037
50 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -1.133 -0.038
51 249259_at AT5G41660 unknown -1.080 -0.082
52 263479_x_at AT2G04000 unknown -1.075 -0.033
53 250605_at AT5G07570 [glycine/proline-rich protein] -1.070 -0.001
54 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.995 0.361
55 250979_at AT5G03090 unknown -0.874 0.059
56 262902_x_at AT1G59930 [MADS-box family protein] -0.849 -0.016
57 265380_at AT2G16670 [copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)] -0.821 0.056
58 249726_at AT5G35480 unknown -0.809 0.287
59 266393_at AT2G41260 ATM17, M17 -0.783 -0.040
60 253707_at AT4G29200 [Beta-galactosidase related protein] -0.769 0.063
61 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.759 0.094
62 246888_at AT5G26270 unknown -0.747 -0.006
63 262719_at AT1G43590 unknown -0.742 -0.055
64 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.720 0.070
65 250135_at AT5G15360 unknown -0.646 0.096
66 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] -0.640 -0.122
67 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.631 0.042
68 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.627 -0.036
69 263851_at AT2G04460 unknown -0.625 -0.051
70 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] -0.595 -0.036
71 246390_at AT1G77330 ACO5, ACC oxidase 5 -0.557 -0.015
72 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.555 -0.072
73 257354_x_at AT2G23480 unknown -0.551 0.031
74 257284_at AT3G29650 [CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)] -0.543 -0.002
75 250942_at AT5G03350 [Legume lectin family protein] -0.538 0.039
76 248394_at AT5G52070 [Agenet domain-containing protein] -0.532 0.054
77 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.531 -0.035
78 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.466 -0.016
79 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.438 0.002
80 249715_at AT5G35760 [Beta-galactosidase related protein] -0.431 -0.038
81 252545_at AT3G45820 unknown -0.430 0.008
82 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.425 0.045
83 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.420 -0.068
84 265503_at AT2G15510 [non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)] -0.418 -0.015
85 256602_at AT3G28310 unknown -0.417 -0.057
86 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.411 -0.083
87 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.410 0.037
88 250639_at AT5G07560 ATGRP20, GRP20, glycine-rich protein 20 -0.409 -0.003
89 247640_at AT5G60610 [F-box/RNI-like superfamily protein] -0.401 0.074
90 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.384 0.047
91 245103_at AT2G41590 unknown -0.383 0.037
92 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.380 -0.061
93 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.374 0.091
94 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.366 0.063
95 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] -0.366 0.017