4.0:Information of module
AtHDA6(rts1-1) rts1-5
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009692 ethylene metabolic process BP 1.190e-03
GO:0009693 ethylene biosynthetic process BP 1.190e-03
GO:0043449 cellular alkene metabolic process BP 1.190e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006995 cellular response to nitrogen starvation BP 6.652e-04
GO:0009749 response to glucose BP 1.670e-03
GO:0006664 glycolipid metabolic process BP 1.752e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
AtHDA6(rts1-1) rts1-5		 Log2 signal ratio
Leafminer damaged seedlings
1 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.623 0.159
2 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.458 -0.044
3 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 0.377 0.248
4 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.360 1.035
5 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.342 0.656
6 256569_at AT3G19550 unknown 0.272 0.577
7 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.259 0.384
8 260627_at AT1G62310 [transcription factor jumonji (jmjC) domain-containing protein] 0.243 0.301
9 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.241 0.008
10 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.240 -0.412
11 253910_at AT4G27290 [S-locus lectin protein kinase family protein] 0.238 -0.007
12 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.237 0.415
13 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 0.235 -0.404
14 266968_at AT2G39360 [Protein kinase superfamily protein] 0.229 0.128
15 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] 0.209 -0.258
16 248392_at AT5G52050 [MATE efflux family protein] 0.201 0.866
17 263133_at AT1G78450 [SOUL heme-binding family protein] 0.196 -0.432
18 262552_at AT1G31350 KUF1, KAR-UP F-box 1 0.195 0.038
19 260909_at AT1G02670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.193 0.016
20 247619_at AT5G60290 unknown 0.193 -0.033
21 261924_at AT1G22550 [Major facilitator superfamily protein] 0.192 0.077
22 245477_at AT4G16110 ARR2, response regulator 2, RR2, response regulator 2 0.189 -0.042
23 256332_at AT1G76890 AT-GT2, GT2 0.187 -0.380
24 246397_at AT1G58190 AtRLP9, receptor like protein 9, RLP9, receptor like protein 9 0.182 0.034
25 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.175 0.328
26 248205_at AT5G54300 unknown 0.171 0.559
27 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.165 -0.467
28 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 0.162 -0.253
29 255037_at AT4G09460 AtMYB6, myb domain protein 6, MYB6, myb domain protein 6 0.160 0.067
30 256674_at AT3G52360 unknown 0.157 -0.613
31 264519_at AT1G10000 [Ribonuclease H-like superfamily protein] 0.156 -0.037
32 260970_at AT1G53640 unknown 0.156 0.012
33 266118_at AT2G02130 LCR68, low-molecular-weight cysteine-rich 68, PDF2.3 0.154 -0.273
34 259853_at AT1G72300 PSY1R, PSY1 receptor 0.151 -0.228
35 260641_at AT1G53200 unknown 0.149 -0.095
36 252298_at AT3G49060 [U-box domain-containing protein kinase family protein] 0.149 -0.107
37 264663_at AT1G09970 LRR XI-23, RLK7, receptor-like kinase 7 0.149 0.344
38 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.146 0.287
39 246524_at AT5G15860 ATPCME, prenylcysteine methylesterase, ICME, Isoprenylcysteine methylesterase, PCME, prenylcysteine methylesterase 0.143 -0.263
40 267225_at AT2G44000 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.141 0.045
41 267581_at AT2G41980 [Protein with RING/U-box and TRAF-like domains] 0.141 -0.100
42 260770_at AT1G49200 [RING/U-box superfamily protein] 0.140 -0.892
43 250084_at AT5G17240 SDG40, SET domain group 40 0.138 -0.112
44 248135_at AT5G54890 mCSF2, mitochondrial CAF-like splicing factor 2 0.135 -0.089
45 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 0.134 0.110
46 252144_at AT3G51190 [Ribosomal protein L2 family] 0.132 -0.014
47 267632_at AT2G42160 BRIZ1, BRAP2 RING ZnF UBP domain-containing protein 1 0.130 0.119
48 252979_at AT4G38225 unknown 0.129 -0.075
49 248949_at AT5G45570 [Ulp1 protease family protein] -1.351 -0.024
50 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -1.133 0.000
51 249259_at AT5G41660 unknown -1.080 -0.036
52 263479_x_at AT2G04000 unknown -1.075 -0.032
53 250605_at AT5G07570 [glycine/proline-rich protein] -1.070 0.022
54 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.995 -0.287
55 250979_at AT5G03090 unknown -0.874 0.000
56 262902_x_at AT1G59930 [MADS-box family protein] -0.849 -0.132
57 265380_at AT2G16670 [copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)] -0.821 0.010
58 249726_at AT5G35480 unknown -0.809 -0.171
59 266393_at AT2G41260 ATM17, M17 -0.783 0.037
60 253707_at AT4G29200 [Beta-galactosidase related protein] -0.769 -0.004
61 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.759 0.090
62 246888_at AT5G26270 unknown -0.747 0.273
63 262719_at AT1G43590 unknown -0.742 -0.017
64 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.720 -0.247
65 250135_at AT5G15360 unknown -0.646 -0.011
66 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] -0.640 -0.013
67 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.631 0.354
68 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.627 0.002
69 263851_at AT2G04460 unknown -0.625 -0.233
70 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] -0.595 -0.059
71 246390_at AT1G77330 ACO5, ACC oxidase 5 -0.557 -0.124
72 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.555 0.044
73 257354_x_at AT2G23480 unknown -0.551 0.005
74 257284_at AT3G29650 [CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)] -0.543 -0.005
75 250942_at AT5G03350 [Legume lectin family protein] -0.538 -0.003
76 248394_at AT5G52070 [Agenet domain-containing protein] -0.532 0.012
77 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.531 -0.038
78 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.466 0.322
79 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] -0.438 -0.002
80 249715_at AT5G35760 [Beta-galactosidase related protein] -0.431 -0.020
81 252545_at AT3G45820 unknown -0.430 0.018
82 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.425 -0.079
83 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.420 -0.034
84 265503_at AT2G15510 [non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)] -0.418 0.025
85 256602_at AT3G28310 unknown -0.417 0.014
86 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.411 -0.094
87 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.410 0.951
88 250639_at AT5G07560 ATGRP20, GRP20, glycine-rich protein 20 -0.409 0.098
89 247640_at AT5G60610 [F-box/RNI-like superfamily protein] -0.401 -0.068
90 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.384 -0.673
91 245103_at AT2G41590 unknown -0.383 0.049
92 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.380 0.064
93 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.374 -0.063
94 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.366 -0.129
95 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] -0.366 -0.016