4.0:Information of module
des1.1
In comparison with aerial organ callus inducing medium 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 8.464e-17
GO:0009719 response to endogenous stimulus BP 2.061e-16
GO:0010033 response to organic substance BP 3.665e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901135 carbohydrate derivative metabolic proces... BP 3.143e-11
GO:0019637 organophosphate metabolic process BP 1.032e-10
GO:0006090 pyruvate metabolic process BP 2.331e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
des1.1		 Log2 signal ratio
aerial organ callus inducing medium 24h
1 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 0.686 0.623
2 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] 0.679 0.690
3 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.534 1.073
4 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.496 0.818
5 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.494 0.301
6 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.435 0.711
7 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.428 0.421
8 256569_at AT3G19550 unknown 0.427 0.025
9 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.400 -0.102
10 265511_at AT2G05540 [Glycine-rich protein family] 0.374 0.039
11 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.329 -0.063
12 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.293 0.138
13 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.289 0.177
14 249454_at AT5G39520 unknown 0.285 0.629
15 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.283 0.316
16 247610_at AT5G60630 unknown 0.261 0.133
17 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.259 0.005
18 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.258 0.590
19 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 0.253 -0.074
20 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.252 0.690
21 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.240 0.137
22 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.234 0.096
23 265817_at AT2G18050 HIS1-3, histone H1-3 0.231 0.131
24 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.226 0.218
25 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.219 -0.077
26 263829_at AT2G40435 unknown 0.215 -0.076
27 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.213 -0.021
28 250723_at AT5G06300 LOG7, LONELY GUY 7 0.206 0.072
29 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.202 0.394
30 251304_at AT3G61990 OMTF3, O-MTase family 3 protein 0.198 0.099
31 258791_at AT3G04720 AtPR4, HEL, HEVEIN-LIKE, PR-4, PR4, pathogenesis-related 4 0.197 0.283
32 259103_at AT3G11690 unknown 0.197 0.029
33 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.193 0.101
34 253224_at AT4G34860 A/N-InvB, alkaline/neutral invertase B 0.185 0.106
35 247280_at AT5G64260 EXL2, EXORDIUM like 2 0.185 0.189
36 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.184 1.178
37 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.184 0.189
38 249839_at AT5G23405 [HMG-box (high mobility group) DNA-binding family protein] 0.183 0.043
39 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.183 0.126
40 265341_at AT2G18360 [alpha/beta-Hydrolases superfamily protein] 0.182 0.155
41 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.182 -0.004
42 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.181 -0.017
43 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.181 -0.021
44 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.180 0.408
45 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.179 0.433
46 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.177 -0.099
47 260897_at AT1G29330 AERD2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ATERD2, ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ERD2, ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2 0.173 0.138
48 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.173 0.490
49 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.172 -0.124
50 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.172 -0.049
51 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.171 0.096
52 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.171 0.497
53 258017_at AT3G19370 unknown -0.373 -0.214
54 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.216 -0.149
55 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER -0.215 0.028
56 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.200 -0.901
57 266971_at AT2G39580 unknown -0.187 -0.081
58 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.179 -0.006
59 244997_at ATCG00170 RPOC2 -0.169 -0.252
60 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.169 -0.000
61 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 -0.166 -0.097
62 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 -0.165 -0.190
63 262773_at AT1G13220 CRWN2, CROWDED NUCLEI 2, LINC2, LITTLE NUCLEI2 -0.164 -0.105
64 244995_at ATCG00150 ATPI -0.161 -0.233
65 245522_at AT4G15890 [binding] -0.159 0.018
66 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.154 0.004
67 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.151 -0.044
68 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.149 0.073
69 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.148 0.143
70 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 -0.148 0.230
71 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.148 0.021
72 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.147 -0.666
73 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.143 -0.313
74 258888_at AT3G05620 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.140 -0.024
75 258661_at AT3G02930 unknown -0.136 -0.006
76 258918_at AT3G10560 CYP77A7, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, UNE9, UNFERTILIZED EMBRYO SAC 9 -0.136 -0.050
77 255876_at AT2G40480 unknown -0.134 -0.047
78 254200_at AT4G24110 unknown -0.133 0.178
79 253947_at AT4G26760 MAP65-2, microtubule-associated protein 65-2 -0.131 -0.015
80 260937_at AT1G45160 [Protein kinase superfamily protein] -0.131 0.004
81 254710_at AT4G18050 ABCB9, ATP-binding cassette B9, PGP9, P-glycoprotein 9 -0.130 -0.059
82 247397_at AT5G62940 DOF5.6, DNA BINDING WITH ONE FINGER 5.6, HCA2, HIGH CAMBIAL ACTIVITY2 -0.130 -0.170
83 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.129 0.150
84 248441_at AT5G51270 [U-box domain-containing protein kinase family protein] -0.128 -0.025
85 253082_at AT4G36230 unknown -0.125 -0.002
86 255664_at AT4G00440 TRM15, TON1 Recruiting Motif 15 -0.124 -0.061
87 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.124 0.080
88 253849_at AT4G28080 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.123 -0.205
89 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY -0.123 -0.067
90 262391_at AT1G49530 GGPS6, geranylgeranyl pyrophosphate synthase 6 -0.122 -0.019
91 262577_at AT1G15290 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.121 -0.238
92 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 -0.121 -0.052
93 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.117 -0.020
94 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.116 0.012
95 266990_at AT2G39190 ATATH8 -0.113 -0.161
96 256603_at AT3G28270 unknown -0.112 -0.756
97 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 -0.110 0.038
98 258898_at AT3G05740 RECQI1, RECQ helicase l1 -0.109 -0.066
99 267021_at AT2G39300 unknown -0.109 -0.085
100 267410_at AT2G34920 EDA18, embryo sac development arrest 18 -0.109 -0.062
101 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.105 -0.412
102 258123_at AT3G18040 MPK9, MAP kinase 9 -0.105 0.009
103 249046_at AT5G44400 [FAD-binding Berberine family protein] -0.105 -0.176
104 255053_at AT4G09730 RH39, RH39 -0.104 -0.104