4.0:Information of module
upf1
In comparison with Elevated CO2 AMPLE N NIGHT help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009814 defense response, incompatible interacti... BP 1.473e-27
GO:0009627 systemic acquired resistance BP 1.857e-26
GO:0045087 innate immune response BP 7.416e-25
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010817 regulation of hormone levels BP 7.308e-11
GO:0007017 microtubule-based process BP 1.578e-09
GO:0008361 regulation of cell size BP 1.753e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
upf1		 Log2 signal ratio
Elevated CO2 AMPLE N NIGHT
1 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.851 0.505
2 264648_at AT1G09080 BIP3, binding protein 3 0.755 0.607
3 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.721 0.475
4 254252_at AT4G23310 CRK23, cysteine-rich RLK (RECEPTOR-like protein kinase) 23 0.714 0.286
5 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.706 0.445
6 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.692 -0.040
7 259559_at AT1G21240 WAK3, wall associated kinase 3 0.608 0.349
8 256577_at AT3G28220 [TRAF-like family protein] 0.584 0.015
9 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.567 0.134
10 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.566 0.025
11 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.565 0.334
12 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.541 0.386
13 252345_at AT3G48640 unknown 0.537 0.252
14 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.519 -0.027
15 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B 0.490 0.084
16 262902_x_at AT1G59930 [MADS-box family protein] 0.484 0.044
17 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.484 0.198
18 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.480 -0.034
19 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.478 0.216
20 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.475 0.463
21 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.472 0.286
22 252383_at AT3G47780 ABCA7, ATP-binding cassette A7, ATATH6, A. THALIANA ABC2 HOMOLOG 6, ATH6, ABC2 homolog 6 0.462 0.093
23 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.460 0.229
24 251419_at AT3G60470 unknown 0.459 0.002
25 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.457 0.346
26 263854_at AT2G04430 atnudt5, nudix hydrolase homolog 5, NUDT5, nudix hydrolase homolog 5 0.456 0.333
27 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.456 0.306
28 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.450 0.362
29 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.449 -0.035
30 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.447 -0.091
31 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.440 0.471
32 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.436 -0.128
33 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.425 0.076
34 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.416 0.078
35 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.412 0.181
36 257591_at AT3G24900 AtRLP39, receptor like protein 39, RLP39, receptor like protein 39 0.412 0.355
37 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.410 0.295
38 249896_at AT5G22530 unknown 0.408 0.531
39 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.407 0.403
40 265892_at AT2G15020 unknown 0.406 -0.158
41 248322_at AT5G52760 [Copper transport protein family] 0.400 0.253
42 255259_at AT4G05020 NDB2, NAD(P)H dehydrogenase B2 0.400 0.193
43 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.398 -0.015
44 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.394 0.111
45 254229_at AT4G23610 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.389 0.291
46 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 0.382 0.001
47 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.374 0.044
48 259850_at AT1G72240 unknown 0.371 0.196
49 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.370 0.328
50 251422_at AT3G60540 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.369 0.193
51 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.368 0.181
52 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.366 0.276
53 251059_at AT5G01810 ATPK10, PROTEIN KINASE 10, CIPK15, CBL-interacting protein kinase 15, PKS3, SIP2, SOS3-INTERACTING PROTEIN 2, SNRK3.1, SNF1-RELATED PROTEIN KINASE 3.1 0.365 -0.016
54 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.363 0.123
55 254253_at AT4G23320 CRK24, cysteine-rich RLK (RECEPTOR-like protein kinase) 24 0.359 0.147
56 254390_at AT4G21940 CPK15, calcium-dependent protein kinase 15 0.358 0.114
57 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.355 0.121
58 257262_at AT3G21890 BBX31, B-box domain protein 31 0.355 -0.097
59 253173_at AT4G35110 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.343 0.213
60 246125_at AT5G19875 unknown 0.342 0.059
61 254231_at AT4G23810 ATWRKY53, WRKY53 0.339 0.280
62 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] 0.336 0.067
63 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.332 -0.029
64 245375_at AT4G17660 [Protein kinase superfamily protein] 0.331 0.298
65 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.328 0.329
66 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.328 0.224
67 256188_at AT1G30160 unknown 0.326 0.029
68 261240_at AT1G32940 ATSBT3.5, SBT3.5 0.326 0.121
69 261443_at AT1G28480 GRX480, roxy19 0.325 0.187
70 248816_at AT5G47010 ATUPF1, LBA1, LOW-LEVEL BETA-AMYLASE 1, UPF1 -0.742 -0.043
71 260948_at AT1G06100 [Fatty acid desaturase family protein] -0.412 0.003
72 262543_at AT1G34245 EPF2, EPIDERMAL PATTERNING FACTOR 2 -0.403 -0.035
73 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.388 -0.160
74 248807_at AT5G47500 PME5, pectin methylesterase 5 -0.378 -0.026
75 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.376 0.014
76 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.364 -0.112
77 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b -0.363 0.209
78 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.359 -0.101
79 261175_at AT1G04800 [glycine-rich protein] -0.347 0.041
80 261203_at AT1G12845 unknown -0.343 -0.086
81 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.337 -0.041
82 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS -0.328 -0.091
83 256275_at AT3G12110 ACT11, actin-11 -0.317 -0.076
84 248509_at AT5G50335 unknown -0.310 -0.048
85 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.306 -0.130
86 248656_at AT5G48460 [Actin binding Calponin homology (CH) domain-containing protein] -0.304 -0.029
87 245789_at AT1G32090 [early-responsive to dehydration stress protein (ERD4)] -0.303 -0.119
88 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.300 -0.122
89 247048_at AT5G66560 [Phototropic-responsive NPH3 family protein] -0.300 0.010
90 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.297 -0.005
91 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.296 -0.124
92 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 -0.287 -0.037
93 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.286 -0.071
94 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 -0.282 0.001
95 250936_at AT5G03120 unknown -0.279 -0.041
96 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.271 -0.141
97 258796_at AT3G04630 WDL1, WVD2-like 1 -0.270 -0.039
98 260081_at AT1G78170 unknown -0.269 -0.150
99 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.261 -0.025
100 258530_at AT3G06840 unknown -0.257 -0.047
101 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.251 -0.020
102 256527_at AT1G66100 [Plant thionin] -0.248 -0.048
103 266035_at AT2G05990 ENR1, ENOYL-ACP REDUCTASE 1, MOD1, MOSAIC DEATH 1 -0.244 -0.065
104 251919_at AT3G53800 Fes1B, Fes1B -0.239 -0.135
105 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] -0.237 -0.104
106 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -0.236 0.014
107 252280_at AT3G49260 iqd21, IQ-domain 21 -0.233 -0.095
108 255675_at AT4G00480 ATMYC1, myc1 -0.232 -0.035
109 259180_at AT3G01680 AtSEOR1, Arabidopsis thaliana sieve element occlusion-related 1, SEOb, sieve element occlusion b, SEOR1, Sieve-Element-Occlusion-Related 1 -0.231 -0.080
110 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 -0.231 0.048
111 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 -0.230 0.018
112 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.230 -0.171
113 245657_at AT1G56720 [Protein kinase superfamily protein] -0.230 -0.102
114 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.230 -0.053
115 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.229 -0.019
116 264529_at AT1G30820 [CTP synthase family protein] -0.226 -0.088
117 246097_at AT5G20270 HHP1, heptahelical transmembrane protein1 -0.225 -0.104
118 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.225 -0.135
119 255709_at AT4G00180 YAB3, YABBY3 -0.224 -0.062
120 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 -0.223 -0.160
121 263628_at AT2G04780 FLA7, FASCICLIN-like arabinoogalactan 7 -0.221 -0.076
122 256125_at AT1G18250 ATLP-1 -0.219 -0.065
123 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.217 -0.124
124 249916_at AT5G22880 H2B, HISTONE H2B, HTB2, histone B2 -0.214 -0.028
125 258663_at AT3G08670 unknown -0.212 0.026
126 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.211 -0.017
127 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.208 -0.024
128 266946_at AT2G18890 [Protein kinase superfamily protein] -0.206 -0.075
129 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] -0.205 -0.047
130 251881_at AT3G54250 [GHMP kinase family protein] -0.204 -0.081
131 251494_at AT3G59350 [Protein kinase superfamily protein] -0.204 -0.008
132 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.202 -0.075
133 259151_at AT3G10310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.200 -0.006
134 248681_at AT5G48900 [Pectin lyase-like superfamily protein] -0.200 -0.141
135 246288_at AT1G31850 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.200 -0.050
136 261169_at AT1G04920 ATSPS3F, sucrose phosphate synthase 3F, SPS3F, sucrose phosphate synthase 3F -0.199 -0.063
137 255851_at AT1G67040 TRM22, TON1 Recruiting Motif 22 -0.199 -0.152