4.0:Information of module
sid2
In comparison with Elevated CO2 expanding leaf help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 6.465e-09
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 9.266e-08
GO:0006081 cellular aldehyde metabolic process BP 1.136e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009627 systemic acquired resistance BP 4.398e-69
GO:0045087 innate immune response BP 1.788e-67
GO:0006955 immune response BP 3.339e-67
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sid2		 Log2 signal ratio
Elevated CO2 expanding leaf
1 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.714 -0.016
2 246200_at AT4G37240 unknown 0.699 -0.007
3 264238_at AT1G54740 unknown 0.625 0.003
4 257076_at AT3G19680 unknown 0.598 0.047
5 255511_at AT4G02075 PIT1, pitchoun 1 0.526 -0.014
6 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] 0.471 -0.007
7 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] 0.469 -0.006
8 263829_at AT2G40435 unknown 0.468 -0.040
9 249234_at AT5G42200 [RING/U-box superfamily protein] 0.468 -0.025
10 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.450 0.137
11 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.447 -0.026
12 255943_at AT1G22370 AtUGT85A5, UDP-glucosyl transferase 85A5, UGT85A5, UDP-glucosyl transferase 85A5 0.443 -0.111
13 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.441 0.004
14 252014_at AT3G52870 [IQ calmodulin-binding motif family protein] 0.436 0.011
15 248432_at AT5G51390 unknown 0.434 0.046
16 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.415 0.027
17 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.406 -0.038
18 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.392 -0.025
19 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.383 -0.016
20 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 0.375 -0.011
21 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 0.371 -0.011
22 260367_at AT1G69760 unknown 0.369 0.028
23 246253_at AT4G37260 ATMYB73, MYB73, myb domain protein 73 0.363 0.015
24 264379_at AT2G25200 unknown 0.359 0.053
25 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.349 -0.063
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.345 -0.008
27 266259_at AT2G27830 unknown 0.344 0.123
28 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.344 0.081
29 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.336 -0.024
30 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] 0.331 0.031
31 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.329 0.067
32 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] 0.326 0.006
33 255818_at AT2G33570 GALS1, galactan synthase 1 0.324 -0.055
34 262245_at AT1G48240 ATNPSN12, NPSN12, novel plant snare 12 0.319 -0.026
35 253165_at AT4G35320 unknown 0.317 -0.016
36 247585_at AT5G60680 unknown 0.305 0.012
37 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.302 -0.009
38 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN 0.295 -0.035
39 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.284 0.001
40 257895_at AT3G16950 LPD1, lipoamide dehydrogenase 1, ptlpd1 0.284 -0.076
41 261921_at AT1G65900 unknown 0.281 -0.063
42 260748_at AT1G49210 [RING/U-box superfamily protein] 0.277 0.033
43 248776_at AT5G47900 unknown 0.274 -0.041
44 246021_at AT5G21100 [Plant L-ascorbate oxidase] 0.274 -0.020
45 245362_at AT4G17460 HAT1, JAB, JAIBA 0.273 -0.027
46 259996_at AT1G67910 unknown 0.272 0.010
47 250233_at AT5G13460 IQD11, IQ-domain 11 0.272 0.016
48 259658_at AT1G55370 NDF5, NDH-dependent cyclic electron flow 5 0.272 -0.036
49 264987_at AT1G27030 unknown 0.270 -0.064
50 252230_at AT3G49810 [ARM repeat superfamily protein] 0.268 -0.019
51 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.267 -0.041
52 250937_at AT5G03230 unknown 0.264 -0.011
53 263421_at AT2G17230 EXL5, EXORDIUM like 5 0.264 -0.008
54 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 0.262 0.001
55 257672_at AT3G20300 unknown 0.256 -0.022
56 257300_at AT3G28080 UMAMIT47, Usually multiple acids move in and out Transporters 47 0.256 0.007
57 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 0.251 -0.064
58 260427_at AT1G72430 SAUR78, SMALL AUXIN UPREGULATED RNA 78 0.249 0.025
59 245731_at AT1G73500 ATMKK9, MKK9, MAP kinase kinase 9 0.241 0.099
60 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.241 -0.042
61 245906_at AT5G11070 unknown 0.239 -0.004
62 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 0.237 0.021
63 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 0.237 0.064
64 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 0.237 0.085
65 251676_at AT3G57320 unknown 0.235 -0.053
66 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] 0.235 -0.052
67 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 0.233 -0.001
68 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.233 0.007
69 265057_at AT1G52140 unknown 0.232 0.035
70 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] 0.227 -0.119
71 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.226 -0.020
72 251059_at AT5G01810 ATPK10, PROTEIN KINASE 10, CIPK15, CBL-interacting protein kinase 15, PKS3, SIP2, SOS3-INTERACTING PROTEIN 2, SNRK3.1, SNF1-RELATED PROTEIN KINASE 3.1 0.225 0.076
73 252851_at AT4G40080 [ENTH/ANTH/VHS superfamily protein] 0.223 -0.003
74 260126_at AT1G36370 SHM7, serine hydroxymethyltransferase 7 0.222 0.013
75 252427_at AT3G47640 PYE, POPEYE 0.211 -0.000
76 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.208 0.006
77 248681_at AT5G48900 [Pectin lyase-like superfamily protein] 0.208 0.009
78 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor 0.207 -0.010
79 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.144 0.489
80 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -1.048 0.499
81 258947_at AT3G01830 [Calcium-binding EF-hand family protein] -1.007 0.379
82 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 -0.936 0.360
83 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 -0.915 0.353
84 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 -0.888 0.444
85 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -0.880 0.207
86 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.870 0.328
87 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.863 0.210
88 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 -0.806 0.166
89 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.793 0.323
90 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.786 0.233
91 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 -0.778 0.188
92 259550_at AT1G35230 AGP5, arabinogalactan protein 5 -0.761 0.291
93 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.753 0.305
94 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -0.747 0.106
95 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.740 0.317
96 247314_at AT5G64000 ATSAL2, SAL2 -0.726 0.349
97 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] -0.724 0.201
98 248322_at AT5G52760 [Copper transport protein family] -0.722 0.306
99 260804_at AT1G78410 [VQ motif-containing protein] -0.718 0.306
100 260568_at AT2G43570 CHI, chitinase, putative -0.705 0.499
101 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.698 0.281
102 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] -0.696 0.277
103 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.688 0.359
104 255595_at AT4G01700 [Chitinase family protein] -0.686 0.120
105 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 -0.673 0.376
106 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.672 0.244
107 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 -0.670 0.230
108 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 -0.639 0.195
109 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.639 0.146
110 254229_at AT4G23610 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.624 0.207
111 257101_at AT3G25020 AtRLP42, receptor like protein 42, RBPG1, response to Botrytis polygalacturonases 1, RLP42, receptor like protein 42 -0.608 0.087
112 259489_at AT1G15790 unknown -0.602 0.262
113 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.595 0.111
114 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.588 0.268
115 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.586 0.174
116 252346_at AT3G48650 [pseudogene] -0.581 0.237
117 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 -0.578 0.335
118 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.574 0.085
119 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.563 0.079
120 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.561 0.356
121 251422_at AT3G60540 [Preprotein translocase Sec, Sec61-beta subunit protein] -0.556 0.233
122 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.524 0.394
123 263202_at AT1G05630 5PTASE13, inositol-polyphosphate 5-phosphatase 13, AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13 -0.519 0.014
124 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 -0.505 0.251
125 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.504 0.145
126 260648_at AT1G08050 [Zinc finger (C3HC4-type RING finger) family protein] -0.503 0.196
127 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.499 0.127
128 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 -0.487 0.055
129 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.484 0.264
130 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.484 0.137
131 256366_at AT1G66880 [Protein kinase superfamily protein] -0.483 0.222
132 248889_at AT5G46230 unknown -0.480 0.101
133 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.470 0.170
134 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] -0.467 0.179
135 259065_at AT3G07520 ATGLR1.4, GLR1.4, glutamate receptor 1.4 -0.462 0.152
136 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] -0.456 0.118
137 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 -0.454 0.203
138 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] -0.448 0.301
139 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 -0.443 0.069
140 259443_at AT1G02360 [Chitinase family protein] -0.440 0.096
141 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis -0.437 0.216
142 258787_at AT3G11840 PUB24, plant U-box 24 -0.435 0.127
143 252862_at AT4G39830 [Cupredoxin superfamily protein] -0.427 0.179
144 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 -0.425 0.269
145 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.419 0.391
146 255121_at AT4G08480 MAPKKK9, mitogen-activated protein kinase kinase kinase 9, MEKK2, MAPK/ERK KINASE KINASE 2, SUMM1, suppressor of mkk1 mkk2 1 -0.410 0.110
147 258203_at AT3G13950 unknown -0.408 0.256
148 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.405 0.231
149 267016_at AT2G39160 unknown -0.397 0.026
150 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.394 0.050
151 251840_at AT3G54960 ATPDI1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, ATPDIL1-3, PDI-like 1-3, PDI1, PROTEIN DISULFIDE ISOMERASE 1, PDIL1-3, PDI-like 1-3 -0.393 0.089
152 254190_at AT4G23885 unknown -0.386 0.102
153 251232_at AT3G62780 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.380 -0.002
154 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.380 0.076
155 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 -0.378 0.123