4.0:Information of module
ptpks2
In comparison with 2xX4x interploidy cross help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072528 pyrimidine-containing compound biosynthe... BP 4.014e-08
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 5.229e-08
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 7.572e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006661 phosphatidylinositol biosynthetic proces... BP 1.410e-05
GO:0046488 phosphatidylinositol metabolic process BP 2.977e-05
GO:0046474 glycerophospholipid biosynthetic process BP 1.265e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ptpks2		 Log2 signal ratio
2xX4x interploidy cross
1 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.478 0.379
2 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 0.314 0.089
3 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.282 0.252
4 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.277 0.026
5 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.273 0.011
6 249427_at AT5G39850 [Ribosomal protein S4] 0.272 0.091
7 265730_at AT2G32220 [Ribosomal L27e protein family] 0.258 0.180
8 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] 0.256 0.004
9 251638_at AT3G57490 [Ribosomal protein S5 family protein] 0.253 0.042
10 266510_at AT2G47990 EDA13, EMBRYO SAC DEVELOPMENT ARREST 13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 19, SWA1, SLOW WALKER1 0.252 0.099
11 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.243 0.189
12 250546_at AT5G08180 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.239 0.044
13 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.230 -0.006
14 264286_at AT1G61870 PPR336, pentatricopeptide repeat 336 0.230 0.071
15 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.221 0.117
16 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.211 0.071
17 249392_at AT5G40150 [Peroxidase superfamily protein] 0.203 -0.009
18 258474_at AT3G02650 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.197 0.076
19 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C 0.197 0.039
20 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 0.196 -0.020
21 245254_at AT4G14680 APS3 0.195 0.043
22 253165_at AT4G35320 unknown 0.194 -0.004
23 246762_at AT5G27620 CYCH;1, cyclin H;1 0.192 0.098
24 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] 0.191 -0.356
25 252034_at AT3G52040 unknown 0.191 0.014
26 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.190 0.081
27 266801_at AT2G22870 EMB2001, embryo defective 2001 0.186 0.171
28 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.564 -0.163
29 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.412 -0.009
30 262719_at AT1G43590 unknown -0.392 -0.127
31 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.379 0.016
32 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.379 -0.038
33 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.360 -0.210
34 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.315 -0.082
35 255511_at AT4G02075 PIT1, pitchoun 1 -0.312 -0.124
36 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.307 -0.006
37 265387_at AT2G20670 unknown -0.303 -0.222
38 267110_at AT2G14800 unknown -0.264 0.054
39 250766_at AT5G05550 [sequence-specific DNA binding transcription factors] -0.262 -0.128
40 246951_at AT5G04880 [expressed protein] -0.255 0.048
41 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 -0.243 0.028
42 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 -0.243 0.003
43 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.230 0.070
44 250013_at AT5G18040 unknown -0.229 -0.071
45 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.227 -0.004
46 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.225 0.012
47 252036_at AT3G52070 unknown -0.222 -0.003
48 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.219 -0.003
49 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 -0.216 -0.003
50 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.208 0.071
51 261395_at AT1G79700 WRI4, WRINKLED 4 -0.201 -0.046
52 262456_at AT1G11260 ATSTP1, SUGAR TRANSPORTER 1, STP1, sugar transporter 1 -0.200 0.059
53 255285_at AT4G04630 unknown -0.199 -0.115