4.0:Information of module
ptpks2
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072528 pyrimidine-containing compound biosynthe... BP 4.014e-08
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 5.229e-08
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 7.572e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006661 phosphatidylinositol biosynthetic proces... BP 1.410e-05
GO:0046488 phosphatidylinositol metabolic process BP 2.977e-05
GO:0046474 glycerophospholipid biosynthetic process BP 1.265e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ptpks2		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.478 0.520
2 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 0.314 -0.484
3 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.282 0.292
4 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.277 0.387
5 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.273 0.602
6 249427_at AT5G39850 [Ribosomal protein S4] 0.272 0.093
7 265730_at AT2G32220 [Ribosomal L27e protein family] 0.258 1.200
8 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] 0.256 0.302
9 251638_at AT3G57490 [Ribosomal protein S5 family protein] 0.253 0.422
10 266510_at AT2G47990 EDA13, EMBRYO SAC DEVELOPMENT ARREST 13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 19, SWA1, SLOW WALKER1 0.252 1.392
11 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.243 0.684
12 250546_at AT5G08180 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.239 1.388
13 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.230 0.624
14 264286_at AT1G61870 PPR336, pentatricopeptide repeat 336 0.230 1.526
15 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.221 0.282
16 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.211 0.915
17 249392_at AT5G40150 [Peroxidase superfamily protein] 0.203 0.409
18 258474_at AT3G02650 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.197 0.843
19 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C 0.197 1.156
20 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 0.196 0.140
21 245254_at AT4G14680 APS3 0.195 0.113
22 253165_at AT4G35320 unknown 0.194 -0.229
23 246762_at AT5G27620 CYCH;1, cyclin H;1 0.192 0.653
24 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] 0.191 -0.202
25 252034_at AT3G52040 unknown 0.191 0.378
26 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.190 0.246
27 266801_at AT2G22870 EMB2001, embryo defective 2001 0.186 -0.484
28 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.564 -0.150
29 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.412 0.400
30 262719_at AT1G43590 unknown -0.392 -0.111
31 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.379 0.757
32 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.379 0.049
33 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.360 1.276
34 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.315 -1.052
35 255511_at AT4G02075 PIT1, pitchoun 1 -0.312 0.461
36 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.307 -0.157
37 265387_at AT2G20670 unknown -0.303 -0.042
38 267110_at AT2G14800 unknown -0.264 -1.200
39 250766_at AT5G05550 [sequence-specific DNA binding transcription factors] -0.262 0.534
40 246951_at AT5G04880 [expressed protein] -0.255 -0.927
41 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 -0.243 -0.031
42 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 -0.243 -0.271
43 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.230 0.359
44 250013_at AT5G18040 unknown -0.229 1.247
45 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.227 1.093
46 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.225 0.196
47 252036_at AT3G52070 unknown -0.222 -0.461
48 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.219 -0.522
49 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 -0.216 1.410
50 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.208 -0.005
51 261395_at AT1G79700 WRI4, WRINKLED 4 -0.201 -0.117
52 262456_at AT1G11260 ATSTP1, SUGAR TRANSPORTER 1, STP1, sugar transporter 1 -0.200 0.178
53 255285_at AT4G04630 unknown -0.199 0.423