4.0:Information of module
cca1-lhy 60m light
In comparison with Dark 1day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 4.097e-08
GO:0048511 rhythmic process BP 4.097e-08
GO:0005982 starch metabolic process BP 1.295e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 6.548e-04
GO:0042364 water-soluble vitamin biosynthetic proce... BP 9.647e-04
GO:0044273 sulfur compound catabolic process BP 1.128e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cca1-lhy 60m light		 Log2 signal ratio
Dark 1day hml
1 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.749 6.925
2 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.642 3.964
3 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 0.407 1.149
4 264211_at AT1G22770 FB, GI, GIGANTEA 0.345 3.397
5 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.338 5.459
6 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.315 -0.083
7 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 0.302 3.102
8 257832_at AT3G26740 CCL, CCR-like 0.301 4.992
9 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.275 -1.780
10 265481_at AT2G15960 unknown 0.269 6.686
11 249811_at AT5G23760 [Copper transport protein family] 0.269 0.087
12 251887_at AT3G54170 ATFIP37, FKBP12 interacting protein 37, FIP37, FKBP12 interacting protein 37 0.267 0.172
13 262958_at AT1G54410 AtHIRD11, HIRD11, dehydrin 11kDa 0.251 0.814
14 248744_at AT5G48250 BBX8, B-box domain protein 8 0.236 3.880
15 249271_at AT5G41790 CIP1, COP1-interactive protein 1 0.235 0.580
16 253014_at AT4G37940 AGL21, AGAMOUS-like 21 0.231 -0.175
17 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.221 -4.611
18 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.214 3.706
19 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 0.212 4.233
20 259841_at AT1G52200 [PLAC8 family protein] 0.212 -1.322
21 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] 0.209 1.210
22 264799_at AT1G08550 AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, NPQ1, non-photochemical quenching 1 0.208 0.292
23 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.206 0.440
24 261844_at AT1G15940 [Tudor/PWWP/MBT superfamily protein] 0.202 1.368
25 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.199 3.276
26 263023_at AT1G23960 unknown 0.196 1.876
27 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 0.191 -1.164
28 255953_at AT1G22070 TGA3, TGA1A-related gene 3 0.188 -0.433
29 249528_at AT5G38720 unknown 0.187 -0.278
30 257791_at AT3G27110 [Peptidase family M48 family protein] 0.186 0.300
31 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 0.184 -5.387
32 262170_at AT1G74940 unknown 0.178 1.742
33 249941_at AT5G22270 unknown 0.174 2.069
34 245588_at AT4G15030 unknown 0.173 0.843
35 263112_at AT1G03080 NET1D, Networked 1D 0.166 1.828
36 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -1.426 -1.195
37 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -1.223 -1.798
38 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.616 -4.694
39 261263_at AT1G26790 [Dof-type zinc finger DNA-binding family protein] -0.521 -5.403
40 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 -0.514 -0.175
41 258575_at AT3G04240 SEC, secret agent -0.454 0.476
42 266757_at AT2G46940 unknown -0.273 -1.113
43 258327_at AT3G22640 PAP85 -0.255 5.798
44 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.238 0.698
45 253298_at AT4G33560 [Wound-responsive family protein] -0.225 -2.793
46 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 -0.208 -2.296
47 266738_at AT2G47010 unknown -0.208 -1.810
48 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.207 -0.094
49 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 -0.199 -5.272
50 250927_at AT5G03270 LOG6, LONELY GUY 6 -0.198 -1.129
51 260770_at AT1G49200 [RING/U-box superfamily protein] -0.196 -1.524
52 257617_at AT3G26550 [Cysteine/Histidine-rich C1 domain family protein] -0.185 -0.175
53 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 -0.177 -2.338
54 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.171 2.703
55 259782_at AT1G29680 unknown -0.167 -0.175
56 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 -0.157 -0.175
57 252685_at AT3G44410 [pseudogene] -0.152 -0.104
58 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.149 1.642
59 254152_at AT4G24410 unknown -0.148 -0.175
60 261997_at AT1G33817 [copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.145 -0.175
61 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.140 -1.657
62 246966_at AT5G24850 CRY3, cryptochrome 3 -0.139 -2.866
63 249450_at AT5G39440 SnRK1.3, SNF1-related protein kinase 1.3 -0.139 -0.175
64 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.139 -0.816
65 261089_at AT1G07570 APK1, APK1A -0.136 0.560
66 248367_at AT5G52360 ADF10, actin depolymerizing factor 10 -0.132 -0.175
67 250265_at AT5G12900 unknown -0.132 0.152
68 256281_at AT3G12560 ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2, TRFL9, TRF-like 9 -0.130 0.378
69 263932_at AT2G35990 LOG2, LONELY GUY 2 -0.129 -0.175