4.0:Information of module
cca1-lhy before light
In comparison with Dark 6h wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 9.815e-08
GO:0000023 maltose metabolic process BP 2.824e-07
GO:0019252 starch biosynthetic process BP 3.930e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044550 secondary metabolite biosynthetic proces... BP 6.147e-15
GO:0016144 S-glycoside biosynthetic process BP 7.648e-12
GO:0019758 glycosinolate biosynthetic process BP 7.648e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cca1-lhy before light		 Log2 signal ratio
Dark 6h wt
1 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.677 0.269
2 247474_at AT5G62280 unknown 0.423 2.724
3 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.347 9.240
4 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.327 6.641
5 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.285 6.672
6 256096_at AT1G13650 unknown 0.276 -5.527
7 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 0.270 -0.344
8 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.269 3.102
9 249932_at AT5G22390 unknown 0.261 -1.753
10 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.244 4.146
11 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.233 0.125
12 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.229 4.355
13 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.229 2.952
14 254954_at AT4G10910 unknown 0.222 4.892
15 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.218 5.166
16 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.207 3.244
17 264454_at AT1G10320 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.206 0.406
18 254638_at AT4G18740 [Rho termination factor] 0.196 -0.213
19 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.196 0.865
20 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.194 -0.722
21 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.186 6.850
22 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.186 -1.368
23 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.181 -0.263
24 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 0.181 -0.334
25 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.173 3.935
26 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.169 1.564
27 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] 0.167 -0.222
28 264648_at AT1G09080 BIP3, binding protein 3 0.157 -6.413
29 262322_at AT1G27590 unknown 0.156 0.878
30 259722_at AT1G60930 ATRECQ4B, RECQ helicase L4B, RECQ4B, RECQ helicase L4B, RECQL4B, RECQ HELICASE L4B 0.155 0.974
31 266990_at AT2G39190 ATATH8 0.154 -0.434
32 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.145 1.098
33 255618_at AT4G01340 [CHP-rich zinc finger protein-related] 0.143 -0.047
34 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 0.142 0.602
35 247222_at AT5G64840 ABCF5, ATP-binding cassette F5, ATGCN5, general control non-repressible 5, GCN5, general control non-repressible 5 0.137 -1.912
36 251633_at AT3G57460 [catalytics] 0.135 -1.978
37 255702_at AT4G00230 XSP1, xylem serine peptidase 1 0.130 0.612
38 259022_at AT3G07420 ATNS2, ASPARAGINYL-TRNA SYNTHETASE 2, NS2, asparaginyl-tRNA synthetase 2, SYNC2, SYNTHETASE C2, SYNC2_ARATH, ASPARAGINYL-TRNA SYNTHETASE 2 0.130 0.126
39 249378_at AT5G40450 unknown 0.129 1.851
40 254659_at AT4G18240 ATSS4, ARABIDOPSIS THALIANA STARCH SYNTHASE 4, SS4, starch synthase 4, SSIV, STARCH SYNTHASE 4 0.128 0.908
41 247899_at AT5G57345 unknown 0.127 -1.385
42 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -1.418 -2.640
43 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -1.196 -4.360
44 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.652 -7.058
45 258575_at AT3G04240 SEC, secret agent -0.561 0.272
46 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 -0.407 -0.047
47 263133_at AT1G78450 [SOUL heme-binding family protein] -0.329 0.355
48 262783_at AT1G10850 [Leucine-rich repeat protein kinase family protein] -0.319 -2.167
49 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.317 -6.244
50 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.271 -1.427
51 246495_at AT5G16200 [50S ribosomal protein-related] -0.246 -1.758
52 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.246 0.314
53 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.193 -3.242
54 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.183 -5.485
55 265892_at AT2G15020 unknown -0.181 -6.260
56 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.179 -1.267
57 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.170 -0.945
58 252187_at AT3G50850 [Putative methyltransferase family protein] -0.169 -0.307
59 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.159 3.339
60 249303_at AT5G41460 unknown -0.153 -3.134
61 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.149 -3.272
62 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.145 -2.614
63 259531_at AT1G12460 [Leucine-rich repeat protein kinase family protein] -0.140 -1.203
64 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 -0.136 -4.230
65 263257_at AT1G10520 AtPol{lambda}, Pol{lambda}, DNA polymerase {lambda} -0.127 -0.326
66 260841_at AT1G29195 unknown -0.127 -0.482
67 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.124 1.225
68 257053_at AT3G15210 ATERF-4, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4, ATERF4, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4, ERF4, ethylene responsive element binding factor 4, RAP2.5, RELATED TO AP2 5 -0.123 1.144
69 262536_at AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -0.119 -1.245
70 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.117 -0.578
71 246183_at AT5G20940 [Glycosyl hydrolase family protein] -0.116 0.365
72 249530_at AT5G38750 [asparaginyl-tRNA synthetase family] -0.114 -0.578
73 255488_at AT4G02630 [Protein kinase superfamily protein] -0.114 -2.030
74 250722_at AT5G06190 unknown -0.112 -0.302
75 249853_at AT5G23320 ATICMTA, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, ATPCM, LPHA-CARBOXYL METHYLTRANSFERASE, ATSTE14, ATSTE14A, homolog of yeast STE14 A, ICMTA, ISOPRENYL CYSTEINE METHYLTRANSFERASE A, STE14, STE14A, homolog of yeast STE14 A -0.108 0.313
76 260366_at AT1G70460 AtPERK13, proline-rich extensin-like receptor kinase 13, PERK13, proline-rich extensin-like receptor kinase 13, RHS10, root hair specific 10 -0.108 -0.586
77 260234_at AT1G74460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.105 -0.578
78 264823_at AT1G03445 BSU1, BRI1 SUPPRESSOR 1 -0.105 -0.578
79 249197_at AT5G42380 CML37, calmodulin like 37 -0.105 -3.879
80 254786_at AT4G12890 [Gamma interferon responsive lysosomal thiol (GILT) reductase family protein] -0.104 -0.047
81 256564_at AT3G29770 ATMES11, ARABIDOPSIS THALIANA METHYL ESTERASE 11, MES11, methyl esterase 11 -0.103 -0.963