4.0:Information of module
cca1-lhy before light
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 9.815e-08
GO:0000023 maltose metabolic process BP 2.824e-07
GO:0019252 starch biosynthetic process BP 3.930e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044550 secondary metabolite biosynthetic proces... BP 6.147e-15
GO:0016144 S-glycoside biosynthetic process BP 7.648e-12
GO:0019758 glycosinolate biosynthetic process BP 7.648e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cca1-lhy before light		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.677 0.048
2 247474_at AT5G62280 unknown 0.423 0.102
3 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.347 -0.091
4 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.327 -0.108
5 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.285 0.474
6 256096_at AT1G13650 unknown 0.276 0.043
7 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 0.270 0.177
8 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.269 0.111
9 249932_at AT5G22390 unknown 0.261 -0.238
10 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.244 0.028
11 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.233 -0.119
12 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.229 0.012
13 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.229 -0.059
14 254954_at AT4G10910 unknown 0.222 -0.003
15 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.218 -0.199
16 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.207 0.028
17 264454_at AT1G10320 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.206 -0.034
18 254638_at AT4G18740 [Rho termination factor] 0.196 -0.097
19 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.196 -0.111
20 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.194 0.019
21 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.186 0.118
22 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.186 -0.012
23 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.181 -0.039
24 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 0.181 0.053
25 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.173 -0.184
26 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.169 -0.179
27 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] 0.167 -0.003
28 264648_at AT1G09080 BIP3, binding protein 3 0.157 -0.055
29 262322_at AT1G27590 unknown 0.156 -0.045
30 259722_at AT1G60930 ATRECQ4B, RECQ helicase L4B, RECQ4B, RECQ helicase L4B, RECQL4B, RECQ HELICASE L4B 0.155 0.114
31 266990_at AT2G39190 ATATH8 0.154 0.010
32 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.145 0.037
33 255618_at AT4G01340 [CHP-rich zinc finger protein-related] 0.143 -0.014
34 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 0.142 0.124
35 247222_at AT5G64840 ABCF5, ATP-binding cassette F5, ATGCN5, general control non-repressible 5, GCN5, general control non-repressible 5 0.137 0.052
36 251633_at AT3G57460 [catalytics] 0.135 0.051
37 255702_at AT4G00230 XSP1, xylem serine peptidase 1 0.130 0.102
38 259022_at AT3G07420 ATNS2, ASPARAGINYL-TRNA SYNTHETASE 2, NS2, asparaginyl-tRNA synthetase 2, SYNC2, SYNTHETASE C2, SYNC2_ARATH, ASPARAGINYL-TRNA SYNTHETASE 2 0.130 -0.108
39 249378_at AT5G40450 unknown 0.129 -0.215
40 254659_at AT4G18240 ATSS4, ARABIDOPSIS THALIANA STARCH SYNTHASE 4, SS4, starch synthase 4, SSIV, STARCH SYNTHASE 4 0.128 -0.028
41 247899_at AT5G57345 unknown 0.127 0.023
42 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -1.418 0.013
43 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -1.196 -0.072
44 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.652 0.069
45 258575_at AT3G04240 SEC, secret agent -0.561 0.021
46 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 -0.407 0.028
47 263133_at AT1G78450 [SOUL heme-binding family protein] -0.329 0.035
48 262783_at AT1G10850 [Leucine-rich repeat protein kinase family protein] -0.319 -0.022
49 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.317 -0.015
50 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.271 0.027
51 246495_at AT5G16200 [50S ribosomal protein-related] -0.246 0.290
52 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.246 -0.024
53 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.193 0.087
54 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.183 -0.090
55 265892_at AT2G15020 unknown -0.181 0.066
56 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.179 -0.014
57 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.170 0.003
58 252187_at AT3G50850 [Putative methyltransferase family protein] -0.169 -0.093
59 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.159 -0.055
60 249303_at AT5G41460 unknown -0.153 -0.050
61 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.149 -0.213
62 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.145 0.061
63 259531_at AT1G12460 [Leucine-rich repeat protein kinase family protein] -0.140 -0.131
64 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 -0.136 -0.111
65 263257_at AT1G10520 AtPol{lambda}, Pol{lambda}, DNA polymerase {lambda} -0.127 -0.000
66 260841_at AT1G29195 unknown -0.127 -0.212
67 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.124 0.071
68 257053_at AT3G15210 ATERF-4, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4, ATERF4, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4, ERF4, ethylene responsive element binding factor 4, RAP2.5, RELATED TO AP2 5 -0.123 -0.056
69 262536_at AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -0.119 -0.094
70 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.117 -0.130
71 246183_at AT5G20940 [Glycosyl hydrolase family protein] -0.116 0.071
72 249530_at AT5G38750 [asparaginyl-tRNA synthetase family] -0.114 0.206
73 255488_at AT4G02630 [Protein kinase superfamily protein] -0.114 -0.158
74 250722_at AT5G06190 unknown -0.112 -0.020
75 249853_at AT5G23320 ATICMTA, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, ATPCM, LPHA-CARBOXYL METHYLTRANSFERASE, ATSTE14, ATSTE14A, homolog of yeast STE14 A, ICMTA, ISOPRENYL CYSTEINE METHYLTRANSFERASE A, STE14, STE14A, homolog of yeast STE14 A -0.108 0.090
76 260366_at AT1G70460 AtPERK13, proline-rich extensin-like receptor kinase 13, PERK13, proline-rich extensin-like receptor kinase 13, RHS10, root hair specific 10 -0.108 0.158
77 260234_at AT1G74460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.105 -0.032
78 264823_at AT1G03445 BSU1, BRI1 SUPPRESSOR 1 -0.105 -0.024
79 249197_at AT5G42380 CML37, calmodulin like 37 -0.105 0.003
80 254786_at AT4G12890 [Gamma interferon responsive lysosomal thiol (GILT) reductase family protein] -0.104 0.031
81 256564_at AT3G29770 ATMES11, ARABIDOPSIS THALIANA METHYL ESTERASE 11, MES11, methyl esterase 11 -0.103 -0.036