4.0:Information of module
cca1-lhy 30m light
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 6.915e-09
GO:0048511 rhythmic process BP 6.915e-09
GO:0009628 response to abiotic stimulus BP 4.869e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 2.572e-10
GO:0009813 flavonoid biosynthetic process BP 2.704e-10
GO:0006733 oxidoreduction coenzyme metabolic proces... BP 4.034e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cca1-lhy 30m light		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.582 0.334
2 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 0.517 -0.169
3 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.481 0.369
4 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.413 0.243
5 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.393 -0.650
6 264211_at AT1G22770 FB, GI, GIGANTEA 0.377 0.566
7 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.370 0.185
8 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.367 0.167
9 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.346 0.172
10 248178_at AT5G54370 [Late embryogenesis abundant (LEA) protein-related] 0.340 0.172
11 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.315 -0.114
12 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor 0.288 0.647
13 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.288 0.130
14 266572_at AT2G23840 [HNH endonuclease] 0.281 -0.255
15 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.274 0.280
16 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 0.267 -0.228
17 256455_at AT1G75190 unknown 0.254 -0.172
18 257832_at AT3G26740 CCL, CCR-like 0.254 0.297
19 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.237 0.443
20 260674_at AT1G19370 unknown 0.212 0.265
21 256430_at AT3G11020 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2B, DRE/CRT-binding protein 2B 0.211 0.064
22 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.209 0.215
23 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.205 0.078
24 266707_at AT2G03310 unknown 0.204 -0.233
25 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.203 0.058
26 260048_at AT1G73750 [Uncharacterised conserved protein UCP031088, alpha/beta hydrolase] 0.199 0.276
27 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.195 -0.152
28 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 0.194 0.332
29 261163_x_at AT1G34410 ARF21, auxin response factor 21 0.193 -0.024
30 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.192 -0.084
31 244994_at ATCG01010 NDHF 0.191 -0.152
32 258833_at AT3G07274 0.183 0.055
33 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 0.179 0.467
34 259595_at AT1G28050 BBX13, B-box domain protein 13 0.175 0.221
35 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.174 0.086
36 258225_at AT3G15630 unknown 0.173 -0.015
37 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.170 0.375
38 260411_at AT1G69890 unknown 0.169 -0.001
39 255003_at AT4G09950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.165 -0.183
40 246703_at AT5G28080 WNK9 0.165 -0.043
41 248394_at AT5G52070 [Agenet domain-containing protein] 0.164 -0.198
42 262958_at AT1G54410 AtHIRD11, HIRD11, dehydrin 11kDa 0.161 -0.013
43 262296_at AT1G27630 CYCT1;3, cyclin T 1;3 0.158 0.202
44 267036_at AT2G38465 unknown 0.155 0.241
45 253819_at AT4G28350 LecRK-VII.2, L-type lectin receptor kinase VII.2 0.148 0.147
46 264787_at AT2G17840 ERD7, EARLY-RESPONSIVE TO DEHYDRATION 7 0.145 0.206
47 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] 0.142 -0.120
48 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.142 -0.458
49 266016_at AT2G18670 [RING/U-box superfamily protein] 0.136 0.134
50 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -1.471 -0.608
51 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -1.296 -0.612
52 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.634 -0.269
53 258575_at AT3G04240 SEC, secret agent -0.632 -0.087
54 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.577 -0.220
55 255049_at AT4G09610 GASA2, GAST1 protein homolog 2 -0.345 -0.029
56 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -0.302 -0.329
57 262783_at AT1G10850 [Leucine-rich repeat protein kinase family protein] -0.300 -0.249
58 246236_at AT4G36470 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.255 -0.283
59 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.251 -0.033
60 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.250 -0.674
61 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.244 0.256
62 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.237 0.223
63 247760_at AT5G59130 [Subtilase family protein] -0.231 -0.651
64 250696_at AT5G06790 unknown -0.229 -0.539
65 246797_at AT5G26790 unknown -0.192 -0.194
66 258956_at AT3G01440 PnsL3, Photosynthetic NDH subcomplex L 3, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 -0.182 -1.084
67 248759_at AT5G47610 [RING/U-box superfamily protein] -0.175 -0.362
68 250589_at AT5G07700 AtMYB76, myb domain protein 76, MYB76, myb domain protein 76 -0.169 -0.156
69 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.168 -0.374
70 259579_at AT1G28010 ABCB14, ATP-binding cassette B14, ATABCB14, Arabidopsis thaliana ATP-binding cassette B14, MDR12, multi-drug resistance 12, PGP14, P-glycoprotein 14 -0.167 -0.010
71 266222_at AT2G28780 unknown -0.167 -0.250
72 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.165 -0.807
73 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.162 -0.134
74 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.162 -0.610
75 253814_at AT4G28290 unknown -0.158 -0.282
76 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.157 -0.975
77 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.151 -0.696
78 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.149 -0.311
79 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.145 -0.501
80 262268_at AT1G42410 [CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.141 -0.022
81 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 -0.139 -0.260
82 262028_at AT1G35560 AtTCP23, TCP23, TCP domain protein 23 -0.138 -0.234
83 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.136 -0.441
84 265378_at AT2G18380 GATA20, GATA transcription factor 20, HANL1, hanaba taranu like 1 -0.135 -0.097
85 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.134 -0.208
86 262905_at AT1G59730 ATH7, thioredoxin H-type 7, TH7, thioredoxin H-type 7 -0.132 0.048
87 253411_at AT4G32980 ATH1, homeobox gene 1 -0.130 -0.709
88 246474_at AT5G17150 [Cystatin/monellin superfamily protein] -0.130 -0.061
89 245406_at AT4G17160 ATRAB2B, ATRABB1A, RAB GTPase homolog B1A, RABB1a, RAB GTPase homolog B1A -0.129 -0.116
90 252073_at AT3G51750 unknown -0.129 0.316
91 259531_at AT1G12460 [Leucine-rich repeat protein kinase family protein] -0.128 -0.389
92 252732_at AT3G43140 transposable element gene -0.127 0.033
93 263094_at AT2G16020 unknown -0.127 -0.056
94 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B -0.125 -0.761
95 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.124 -0.285
96 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.123 -0.356
97 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.121 -0.010