4.0:Information of module
60m light
In comparison with rGRF help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 2.570e-14
GO:0009628 response to abiotic stimulus BP 3.301e-12
GO:0046173 polyol biosynthetic process BP 5.464e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 3.355e-05
GO:0009719 response to endogenous stimulus BP 5.555e-05
GO:0009725 response to hormone BP 6.479e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
60m light		 Log2 signal ratio
rGRF
1 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 1.155 -0.119
2 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 0.961 -0.278
3 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.880 -0.017
4 264211_at AT1G22770 FB, GI, GIGANTEA 0.769 0.083
5 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.649 -0.103
6 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.578 -0.135
7 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.556 -0.111
8 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.553 0.057
9 257262_at AT3G21890 BBX31, B-box domain protein 31 0.540 -0.289
10 248205_at AT5G54300 unknown 0.537 0.022
11 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.528 0.148
12 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.520 -0.234
13 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J 0.506 0.019
14 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] 0.503 -0.079
15 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.493 -0.146
16 261263_at AT1G26790 [Dof-type zinc finger DNA-binding family protein] 0.472 -0.071
17 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 0.472 -0.029
18 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.460 -0.072
19 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.458 0.045
20 251811_at AT3G54990 SMZ, SCHLAFMUTZE 0.419 -0.012
21 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.416 -0.057
22 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 0.414 -0.083
23 250696_at AT5G06790 unknown 0.412 -0.194
24 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.402 -0.180
25 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.393 -0.026
26 257081_at AT3G30460 [RING/U-box superfamily protein] 0.392 -0.148
27 252010_at AT3G52740 unknown 0.390 -0.292
28 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.377 -0.090
29 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.365 -0.008
30 261247_at AT1G20070 unknown 0.364 0.012
31 251725_at AT3G56260 unknown 0.364 -0.038
32 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS 0.363 -0.116
33 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.362 -0.049
34 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.358 0.130
35 266321_at AT2G46660 CYP78A6, cytochrome P450, family 78, subfamily A, polypeptide 6, EOD3, enhancer of da1-1 0.356 0.039
36 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.353 -0.038
37 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.346 -0.407
38 247779_at AT5G58760 DDB2, damaged DNA binding 2 0.342 -0.210
39 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] 0.337 0.010
40 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.327 0.048
41 263433_at AT2G22240 ATIPS2, INOSITOL 3-PHOSPHATE SYNTHASE 2, ATMIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, MIPS2, myo-inositol-1-phosphate synthase 2 0.323 0.005
42 253263_at AT4G34000 ABF3, abscisic acid responsive elements-binding factor 3, AtABF3, DPBF5, DC3 PROMOTER-BINDING FACTOR 5 0.320 0.057
43 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.315 -0.007
44 249134_at AT5G43150 unknown 0.294 0.015
45 266555_at AT2G46270 GBF3, G-box binding factor 3 0.292 0.102
46 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.279 -0.139
47 246125_at AT5G19875 unknown 0.275 0.005
48 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 0.269 -0.005
49 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 0.265 -0.074
50 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 0.264 0.217
51 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.264 -0.095
52 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.263 -0.033
53 251826_at AT3G55110 ABCG18, ATP-binding cassette G18 0.262 -0.032
54 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.262 -0.064
55 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.915 0.103
56 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.687 0.110
57 260431_at AT1G68190 BBX27, B-box domain protein 27 -0.564 0.119
58 258468_at AT3G06070 unknown -0.550 0.123
59 260770_at AT1G49200 [RING/U-box superfamily protein] -0.504 0.008
60 247800_at AT5G58570 unknown -0.501 0.022
61 264788_at AT2G17880 DJC24, DNA J protein C24 -0.483 0.182
62 254954_at AT4G10910 unknown -0.483 0.258
63 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 -0.476 0.173
64 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.468 0.117
65 258225_at AT3G15630 unknown -0.468 0.150
66 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.460 0.174
67 247474_at AT5G62280 unknown -0.440 0.188
68 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.425 0.171
69 261395_at AT1G79700 WRI4, WRINKLED 4 -0.413 0.162
70 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.411 -0.049
71 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.408 0.030
72 255232_at AT4G05330 AGD13, ARF-GAP domain 13 -0.401 0.030
73 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.400 0.024
74 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] -0.394 0.156
75 265387_at AT2G20670 unknown -0.391 0.201
76 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.390 -0.013
77 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] -0.390 -0.007
78 257076_at AT3G19680 unknown -0.389 0.023
79 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.382 0.052
80 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.371 0.032
81 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.356 0.190
82 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.353 -0.072
83 247754_at AT5G59080 unknown -0.351 0.056
84 254193_at AT4G23870 unknown -0.340 0.202
85 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.334 -0.249
86 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.327 0.041
87 256332_at AT1G76890 AT-GT2, GT2 -0.322 -0.009
88 263421_at AT2G17230 EXL5, EXORDIUM like 5 -0.322 -0.023
89 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.321 -0.013
90 250481_at AT5G10310 unknown -0.320 -0.035
91 253317_at AT4G33960 unknown -0.306 -0.013
92 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.306 -0.017
93 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.301 0.017
94 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 -0.286 0.108
95 258953_at AT3G01430 unknown -0.280 0.007
96 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.266 0.049
97 249885_at AT5G22940 F8H, FRA8 homolog -0.261 -0.013
98 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.261 -0.131
99 261594_at AT1G33240 AT-GTL1, GT2-LIKE 1, ATGTL1, GTL1, GT-2-like 1 -0.254 -0.039
100 260799_at AT1G78270 AtUGT85A4, UDP-glucosyl transferase 85A4, UGT85A4, UDP-glucosyl transferase 85A4 -0.252 0.097
101 250524_at AT5G08520 [Duplicated homeodomain-like superfamily protein] -0.248 0.107
102 251192_at AT3G62720 ATXT1, XT1, xylosyltransferase 1, XXT1, XYG XYLOSYLTRANSFERASE 1 -0.247 -0.025
103 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 -0.247 0.179
104 263218_at AT1G30570 HERK2, hercules receptor kinase 2 -0.243 -0.054
105 261608_at AT1G49650 [alpha/beta-Hydrolases superfamily protein] -0.241 0.027
106 264990_at AT1G27210 [ARM repeat superfamily protein] -0.237 0.061
107 262399_at AT1G49500 unknown -0.233 0.097