4.0:Information of module
8h-DC3000 avrRpm1
In comparison with aerial organ callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1902582 single-organism intracellular transport BP 1.857e-17
GO:0050896 response to stimulus BP 9.629e-17
GO:0042221 response to chemical BP 2.284e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 2.828e-09
GO:0044711 single-organism biosynthetic process BP 8.740e-08
GO:0006790 sulfur compound metabolic process BP 3.646e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
8h-DC3000 avrRpm1		 Log2 signal ratio
aerial organ callus inducing medium 48 h
1 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.591 0.381
2 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.483 0.125
3 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.475 0.085
4 264580_at AT1G05340 unknown 0.464 0.308
5 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.438 0.124
6 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 0.429 0.232
7 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.419 0.286
8 265471_at AT2G37130 [Peroxidase superfamily protein] 0.416 0.062
9 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.415 0.591
10 261240_at AT1G32940 ATSBT3.5, SBT3.5 0.364 0.228
11 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.361 -0.132
12 250054_at AT5G17860 CAX7, calcium exchanger 7 0.348 0.231
13 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.347 0.018
14 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.335 0.430
15 252300_at AT3G49160 [pyruvate kinase family protein] 0.322 0.036
16 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.292 0.065
17 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.287 0.043
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.281 0.128
19 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 0.267 -0.148
20 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.260 -0.028
21 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II 0.254 0.222
22 265025_at AT1G24575 unknown 0.253 -0.004
23 260357_at AT1G69260 AFP1, ABI five binding protein 0.253 0.156
24 259893_at AT1G71390 AtRLP11, receptor like protein 11, RLP11, receptor like protein 11 0.251 -0.030
25 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.249 -0.096
26 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.248 -0.012
27 257522_at AT3G08990 [Yippee family putative zinc-binding protein] 0.243 0.011
28 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.240 -0.033
29 245885_at AT5G09440 EXL4, EXORDIUM like 4 0.239 0.130
30 262873_at AT1G64700 unknown 0.238 0.192
31 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] 0.236 0.275
32 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.233 0.172
33 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.231 -0.100
34 249004_at AT5G44570 unknown 0.230 -0.136
35 265955_at AT2G37280 ABCG33, ATP-binding cassette G33, ATPDR5, PLEIOTROPIC DRUG RESISTANCE 5, PDR5, pleiotropic drug resistance 5 0.229 0.395
36 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.229 -0.185
37 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.227 0.482
38 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.226 0.106
39 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 0.216 0.102
40 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.212 0.039
41 245264_at AT4G17245 [RING/U-box superfamily protein] 0.212 -0.173
42 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.210 0.357
43 265999_at AT2G24100 ASG1, ALTERED SEED GERMINATION 1 0.208 -0.108
44 247800_at AT5G58570 unknown 0.202 0.346
45 263032_at AT1G23850 unknown 0.200 0.163
46 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.200 0.186
47 265511_at AT2G05540 [Glycine-rich protein family] 0.200 0.100
48 266140_at AT2G28120 [Major facilitator superfamily protein] 0.197 0.354
49 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.194 0.400
50 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.194 0.627
51 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 0.192 0.159
52 262607_at AT1G13990 unknown 0.187 0.463
53 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.186 0.461
54 255064_at AT4G08950 EXO, EXORDIUM 0.185 0.070
55 260568_at AT2G43570 CHI, chitinase, putative 0.185 0.418
56 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.184 0.296
57 262093_at AT1G56145 [Leucine-rich repeat transmembrane protein kinase] 0.182 0.173
58 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B 0.181 0.416
59 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.180 0.592
60 253343_at AT4G33540 [metallo-beta-lactamase family protein] 0.180 0.072
61 259743_at AT1G71140 [MATE efflux family protein] 0.178 0.341
62 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.177 0.204
63 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] 0.177 0.376
64 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 0.174 0.266
65 259911_at AT1G72680 ATCAD1, CINNAMYL ALCOHOL DEHYDROGENASE 1, CAD1, cinnamyl-alcohol dehydrogenase 0.172 0.310
66 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.172 0.029
67 257654_at AT3G13310 DJC66, DNA J protein C66 0.172 0.203
68 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.170 0.220
69 249705_at AT5G35580 [Protein kinase superfamily protein] 0.170 0.024
70 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.168 0.212
71 248333_at AT5G52390 [PAR1 protein] 0.168 1.125
72 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.168 0.580
73 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.167 0.574
74 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.167 0.210
75 247280_at AT5G64260 EXL2, EXORDIUM like 2 0.163 0.163
76 264001_at AT2G22420 [Peroxidase superfamily protein] 0.162 -0.035
77 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.161 0.470
78 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.348 -0.039
79 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.308 -0.641
80 261834_at AT1G10640 [Pectin lyase-like superfamily protein] -0.301 -0.013
81 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.256 -0.645
82 247056_at AT5G66750 ATDDM1, CHA1, CHR01, CHROMATIN REMODELING 1, CHR1, chromatin remodeling 1, DDM1, DECREASED DNA METHYLATION 1, SOM1, SOMNIFEROUS 1, SOM4 -0.244 0.110
83 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.242 -0.073
84 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 -0.226 0.085
85 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.217 -0.326
86 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.212 -0.541
87 245743_at AT1G51080 unknown -0.210 -0.212
88 259001_at AT3G01960 unknown -0.201 -0.476
89 254609_at AT4G18970 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.201 -0.136
90 263829_at AT2G40435 unknown -0.197 -0.057
91 262212_at AT1G74890 ARR15, response regulator 15 -0.190 -0.463
92 257115_at AT3G20150 [Kinesin motor family protein] -0.186 -0.098
93 249932_at AT5G22390 unknown -0.183 -0.747
94 253243_at AT4G34560 unknown -0.183 -0.155
95 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.176 0.040
96 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.173 -0.056
97 245688_at AT1G28290 AGP31, arabinogalactan protein 31 -0.173 0.143
98 258341_at AT3G22790 NET1A, Networked 1A -0.172 0.021
99 246905_at AT5G25570 unknown -0.171 -0.007
100 250764_at AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.170 0.090
101 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.169 -0.141
102 249546_at AT5G38150 PMI15, plastid movement impaired 15 -0.168 -0.010
103 256675_at AT3G52170 [DNA binding] -0.167 -0.052
104 251292_at AT3G61920 unknown -0.167 -0.083
105 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.167 -0.334
106 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.166 -0.660
107 246947_at AT5G25120 CYP71B11, ytochrome p450, family 71, subfamily B, polypeptide 11 -0.165 -0.241
108 256125_at AT1G18250 ATLP-1 -0.164 0.103
109 253406_at AT4G32890 GATA9, GATA transcription factor 9 -0.162 -0.034
110 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.159 -0.434
111 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.156 -0.100
112 256069_at AT1G13740 AFP2, ABI five binding protein 2 -0.156 -0.120
113 250734_at AT5G06270 unknown -0.156 -0.092
114 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] -0.155 -0.288
115 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.155 0.024
116 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.154 -0.621
117 250554_at AT5G07900 [Mitochondrial transcription termination factor family protein] -0.152 -0.228
118 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 -0.151 -0.021
119 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] -0.150 -0.021
120 254689_at AT4G13710 [Pectin lyase-like superfamily protein] -0.148 0.510
121 257879_at AT3G17160 unknown -0.147 0.001
122 256926_at AT3G22540 unknown -0.143 -0.075
123 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 -0.143 -0.193
124 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.143 0.037
125 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] -0.143 -0.079
126 262922_at AT1G79420 unknown -0.143 -0.017
127 248658_at AT5G48600 ATCAP-C, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, ATSMC3, structural maintenance of chromosome 3, ATSMC4, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, SMC3, structural maintenance of chromosome 3 -0.142 -0.002
128 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 -0.140 -0.203
129 251982_at AT3G53190 [Pectin lyase-like superfamily protein] -0.139 0.007
130 255890_at AT1G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.139 -0.185
131 262370_at AT1G73090 unknown -0.139 -0.219
132 248614_at AT5G49560 [Putative methyltransferase family protein] -0.138 0.122
133 249920_at AT5G19260 FAF3, FANTASTIC FOUR 3 -0.137 -0.229
134 250418_at AT5G11240 [transducin family protein / WD-40 repeat family protein] -0.132 0.140
135 261073_at AT1G07300 [josephin protein-related] -0.132 -0.129
136 264264_at AT1G09250 AIF4, ATBS1 Interacting Factor 4 -0.130 -0.096
137 251669_at AT3G57180 BPG2, BRASSINAZOLE(BRZ) INSENSITIVE PALE GREEN 2 -0.129 -0.440
138 264535_at AT1G55690 [Sec14p-like phosphatidylinositol transfer family protein] -0.126 -0.015
139 260363_at AT1G70550 unknown -0.126 -0.237
140 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 -0.126 -0.353
141 266489_at AT2G35190 ATNPSN11, NPSN11, novel plant snare 11, NSPN11 -0.125 0.072
142 253723_at AT4G29240 [Leucine-rich repeat (LRR) family protein] -0.122 -0.267
143 253251_at AT4G34730 RBF1, RbfA domain-containing protein 1 -0.121 -0.482
144 264987_at AT1G27030 unknown -0.121 -0.219
145 251261_at AT3G62110 [Pectin lyase-like superfamily protein] -0.120 -0.111
146 252612_at AT3G45160 [Putative membrane lipoprotein] -0.120 -0.537
147 262893_at AT1G59790 [Cullin family protein] -0.120 -0.132
148 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.119 -0.326
149 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] -0.119 -0.188
150 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.119 -0.467
151 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 -0.119 0.145
152 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 -0.116 0.068
153 245618_at AT4G14510 ATCFM3B, CFM3B, CRM family member 3B -0.113 -0.189