4.0:Information of module
21h-DC3000 avrRpm1
In comparison with cat2-2; 0h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.984e-88
GO:0006412 translation BP 9.374e-77
GO:0009451 RNA modification BP 8.221e-69
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016144 S-glycoside biosynthetic process BP 3.827e-12
GO:0019758 glycosinolate biosynthetic process BP 3.827e-12
GO:0019761 glucosinolate biosynthetic process BP 3.827e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
21h-DC3000 avrRpm1		 Log2 signal ratio
cat2-2; 0h switch to ambient CO2 concentrations;
1 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 0.601 0.196
2 258034_at AT3G21300 [RNA methyltransferase family protein] 0.327 0.060
3 258100_at AT3G23550 [MATE efflux family protein] 0.311 0.050
4 257636_at AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 0.304 0.024
5 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 0.260 0.046
6 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A 0.244 0.024
7 258505_at AT3G06530 [ARM repeat superfamily protein] 0.241 0.020
8 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.236 0.011
9 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.236 0.019
10 256797_at AT3G18600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.231 0.013
11 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.230 0.036
12 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.225 0.021
13 256288_at AT3G12270 ATPRMT3, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, PRMT3, protein arginine methyltransferase 3 0.225 0.012
14 249354_at AT5G40480 EMB3012, embryo defective 3012 0.217 0.017
15 246282_at AT4G36580 [AAA-type ATPase family protein] 0.217 0.010
16 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 0.215 0.028
17 251611_at AT3G57940 unknown 0.210 -0.001
18 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.208 0.008
19 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 0.203 0.026
20 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 0.202 0.016
21 267349_at AT2G40010 [Ribosomal protein L10 family protein] 0.201 0.025
22 263864_at AT2G04530 CPZ, TRZ2, TRNASE Z 2 0.201 0.054
23 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.200 0.029
24 265991_at AT2G24120 PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3 0.199 0.051
25 257667_at AT3G20440 BE1, BRANCHING ENZYME 1, EMB2729, EMBRYO DEFECTIVE 2729 0.198 0.050
26 251354_at AT3G61090 [Putative endonuclease or glycosyl hydrolase] 0.195 0.008
27 259172_at AT3G03630 CS26, cysteine synthase 26 0.194 0.022
28 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 0.193 -0.004
29 254043_at AT4G25990 CIL 0.191 0.070
30 248891_at AT5G46280 MCM3, MINICHROMOSOME MAINTENANCE 3 0.190 0.028
31 253598_at AT4G30800 [Nucleic acid-binding, OB-fold-like protein] 0.190 0.010
32 265326_at AT2G18220 [Noc2p family] 0.189 -0.011
33 251476_at AT3G59670 unknown 0.188 0.041
34 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] 0.186 0.026
35 251935_at AT3G54090 FLN1, fructokinase-like 1 0.183 0.019
36 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.183 0.025
37 250418_at AT5G11240 [transducin family protein / WD-40 repeat family protein] 0.182 0.015
38 261775_at AT1G76280 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.178 -0.029
39 251256_at AT3G62300 unknown 0.176 -0.004
40 247739_at AT5G59240 [Ribosomal protein S8e family protein] 0.174 0.024
41 256077_at AT1G18090 [5'-3' exonuclease family protein] 0.174 -0.003
42 260316_at AT1G63810 unknown 0.172 0.001
43 255225_at AT4G05410 YAO, YAOZHE 0.171 0.013
44 253057_at AT4G37670 NAGS2, N-acetyl-l-glutamate synthase 2 0.171 -0.034
45 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 0.170 0.031
46 254076_at AT4G25340 ATFKBP53, FKBP53, FK506 BINDING PROTEIN 53 0.168 0.003
47 265730_at AT2G32220 [Ribosomal L27e protein family] 0.168 -0.001
48 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.167 -0.009
49 261296_at AT1G48460 unknown 0.166 0.027
50 252508_at AT3G46210 [Ribosomal protein S5 domain 2-like superfamily protein] 0.165 -0.008
51 245502_at AT4G15640 unknown 0.163 0.020
52 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.162 0.001
53 265139_at AT1G51310 [transferases] 0.162 0.025
54 254173_at AT4G24580 REN1, ROP1 ENHANCER 1 0.162 0.044
55 265274_at AT2G28450 [zinc finger (CCCH-type) family protein] 0.161 -0.003
56 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 0.160 -0.036
57 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 0.160 0.029
58 264818_at AT1G03530 ATNAF1, NAF1, nuclear assembly factor 1 0.159 0.033
59 245909_at AT5G09380 [RNA polymerase III RPC4] 0.159 0.002
60 248357_at AT5G52380 [VASCULAR-RELATED NAC-DOMAIN 6] 0.158 0.004
61 246457_at AT5G16750 TOZ, TORMOZEMBRYO DEFECTIVE 0.158 0.042
62 261301_at AT1G48570 [zinc finger (Ran-binding) family protein] 0.158 0.021
63 260157_at AT1G52930 [Ribosomal RNA processing Brix domain protein] 0.158 0.004
64 260235_at AT1G74560 NRP1, NAP1-related protein 1 0.157 0.002
65 252410_at AT3G47450 ATNOA1, ATNOS1, NOA1, NO ASSOCIATED 1, NOS1, NITRIC OXIDE SYNTHASE 1, RIF1, RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1 0.155 -0.004
66 267044_at AT2G34357 [ARM repeat superfamily protein] 0.154 0.017
67 258111_at AT3G14630 CYP72A9, cytochrome P450, family 72, subfamily A, polypeptide 9 0.152 -0.039
68 263843_at AT2G37020 [Translin family protein] 0.152 0.024
69 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.151 -0.019
70 248975_at AT5G45040 CYTC6A, cytochrome c6A 0.150 0.026
71 259286_at AT3G11480 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein -1.217 -0.189
72 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 -0.839 0.004
73 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.451 -0.163
74 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] -0.307 -0.002
75 254996_at AT4G10390 [Protein kinase superfamily protein] -0.300 -0.031
76 247730_at AT5G59580 UGT76E1, UDP-glucosyl transferase 76E1 -0.280 -0.041
77 247175_at AT5G65280 GCL1, GCR2-like 1 -0.236 -0.046
78 247882_at AT5G57785 unknown -0.231 0.027
79 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.219 -0.014
80 255912_at AT1G66960 LUP5 -0.218 -0.044
81 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.217 0.017
82 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.211 0.032
83 261443_at AT1G28480 GRX480, roxy19 -0.200 -0.039
84 246197_at AT4G37010 CEN2, centrin 2 -0.187 0.009
85 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 -0.185 -0.064
86 263972_at AT2G42760 unknown -0.185 -0.034
87 252084_at AT3G51970 ASAT1, acyl-CoA sterol acyl transferase 1, ATASAT1, ATSAT1, ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1 -0.183 0.003
88 260415_at AT1G69790 [Protein kinase superfamily protein] -0.182 -0.006
89 250983_at AT5G02780 GSTL1, glutathione transferase lambda 1 -0.181 -0.005
90 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 -0.174 -0.055
91 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] -0.174 -0.020
92 249910_at AT5G22630 ADT5, arogenate dehydratase 5 -0.170 0.027
93 246485_at AT5G16080 AtCXE17, carboxyesterase 17, CXE17, carboxyesterase 17 -0.170 0.002
94 262811_at AT1G11700 unknown -0.156 -0.030
95 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.156 -0.104
96 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B -0.154 -0.030
97 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 -0.153 0.001
98 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.150 0.035
99 247304_at AT5G63850 AAP4, amino acid permease 4 -0.146 -0.021
100 255036_at AT4G09560 [Protease-associated (PA) RING/U-box zinc finger family protein] -0.144 0.026
101 264993_at AT1G67290 GLOX1, glyoxal oxidase 1 -0.142 -0.037
102 257022_at AT3G19580 AZF2, zinc-finger protein 2, ZF2, zinc-finger protein 2 -0.141 -0.005
103 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] -0.141 -0.024
104 248133_at AT5G54850 unknown -0.140 -0.018
105 256947_at AT3G19050 POK2, phragmoplast orienting kinesin 2 -0.139 0.043
106 251080_at AT5G02010 ATROPGEF7, ROPGEF7, ROP (rho of plants) guanine nucleotide exchange factor 7 -0.135 0.031
107 259708_at AT1G77420 [alpha/beta-Hydrolases superfamily protein] -0.135 -0.017
108 258752_at AT3G09520 ATEXO70H4, exocyst subunit exo70 family protein H4, EXO70H4, exocyst subunit exo70 family protein H4 -0.134 -0.025
109 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 -0.132 0.004
110 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 -0.131 -0.014
111 255961_at AT1G22340 AtUGT85A7, UDP-glucosyl transferase 85A7, UGT85A7, UDP-glucosyl transferase 85A7 -0.130 0.007
112 246370_at AT1G51920 unknown -0.126 -0.043
113 247424_at AT5G62850 AtSWEET5, AtVEX1, VEGETATIVE CELL EXPRESSED1, SWEET5 -0.126 -0.031
114 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 -0.125 0.052
115 251916_at AT3G53960 [Major facilitator superfamily protein] -0.124 -0.014
116 256572_at AT3G30740 [pseudogene] -0.124 -0.025
117 251826_at AT3G55110 ABCG18, ATP-binding cassette G18 -0.124 -0.027
118 249889_at AT5G22540 unknown -0.124 0.025
119 263788_at AT2G24580 [FAD-dependent oxidoreductase family protein] -0.124 -0.018
120 260897_at AT1G29330 AERD2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ATERD2, ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ERD2, ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2 -0.122 -0.024
121 265479_at AT2G15760 unknown -0.121 -0.023
122 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.120 -0.017
123 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 -0.119 0.035
124 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 -0.118 -0.039
125 256433_at AT3G10985 ATWI-12, ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, SAG20, senescence associated gene 20, WI12, WOUND-INDUCED PROTEIN 12 -0.115 0.011
126 247038_at AT5G67160 EPS1, ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1 -0.111 -0.008
127 250633_at AT5G07460 ATMSRA2, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, PMSR2, peptidemethionine sulfoxide reductase 2 -0.111 -0.006
128 258201_at AT3G13910 unknown -0.107 -0.017
129 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 -0.107 -0.090
130 265057_at AT1G52140 unknown -0.107 0.037
131 260259_at AT1G74300 [alpha/beta-Hydrolases superfamily protein] -0.106 -0.020
132 250948_at AT5G03490 [UDP-Glycosyltransferase superfamily protein] -0.106 -0.006
133 249728_at AT5G24390 [Ypt/Rab-GAP domain of gyp1p superfamily protein] -0.103 -0.024
134 246046_at AT5G28860 unknown -0.103 -0.003
135 267393_at AT2G44500 [O-fucosyltransferase family protein] -0.100 -0.009
136 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.099 -0.054
137 261754_at AT1G76130 AMY2, alpha-amylase-like 2, ATAMY2, ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2 -0.098 -0.027
138 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 -0.098 -0.024
139 256292_at AT1G69430 unknown -0.098 -0.049