4.0:Information of module
12h-DC3000 hrpA
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072528 pyrimidine-containing compound biosynthe... BP 2.790e-04
GO:0072527 pyrimidine-containing compound metabolic... BP 6.012e-04
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 1.771e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0033044 regulation of chromosome organization BP 4.970e-04
GO:0051321 meiotic cell cycle BP 5.983e-04
GO:0043247 telomere maintenance in response to DNA ... BP 8.719e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
12h-DC3000 hrpA		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 255610_at AT4G01190 ATPIPK10, phosphatidylinositol phosphate kinase 10, PIPK10, phosphatidylinositol phosphate kinase 10 0.180 -0.135
2 248225_at AT5G53740 unknown 0.175 -0.069
3 247212_at AT5G65040 unknown 0.147 -0.049
4 257976_at AT3G20840 PLT1, PLETHORA 1 0.143 -0.035
5 254631_at AT4G18610 LSH9, LIGHT SENSITIVE HYPOCOTYLS 9 0.141 -0.054
6 251023_at AT5G02170 [Transmembrane amino acid transporter family protein] 0.137 -0.332
7 253419_at AT4G32780 [phosphoinositide binding] 0.132 -0.201
8 265806_at AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 0.130 0.052
9 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.129 0.156
10 252882_at AT4G39675 unknown 0.124 0.076
11 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.124 -0.166
12 252266_at AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.122 -0.003
13 252766_at AT3G42820 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1)] 0.121 -0.175
14 264842_at AT1G03700 [Uncharacterised protein family (UPF0497)] 0.120 -0.065
15 256858_at AT3G15140 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.116 -0.226
16 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.114 0.223
17 253674_at AT4G29540 AtLpxA, LpxA 0.113 -0.058
18 263453_at AT2G22180 [hydroxyproline-rich glycoprotein family protein] 0.113 -0.124
19 261946_at AT1G64560 0.111 -0.026
20 265112_at AT1G62530 unknown 0.109 0.280
21 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.109 0.078
22 248367_at AT5G52360 ADF10, actin depolymerizing factor 10 0.108 0.073
23 261799_at AT1G30473 [Heavy metal transport/detoxification superfamily protein ] 0.107 -0.023
24 255113_at AT4G08820 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] 0.107 0.020
25 249962_at AT5G18990 [Pectin lyase-like superfamily protein] 0.106 0.278
26 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.106 -0.170
27 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] 0.105 -0.095
28 259857_at AT1G68430 unknown 0.105 -0.276
29 258442_at AT3G01015 [TPX2 (targeting protein for Xklp2) protein family] 0.104 0.158
30 258746_at AT3G05950 [RmlC-like cupins superfamily protein] 0.104 0.219
31 255613_at AT4G01270 [RING/U-box superfamily protein] 0.103 0.011
32 257998_at AT3G27510 [Cysteine/Histidine-rich C1 domain family protein] 0.103 0.027
33 267107_at AT2G14730 unknown 0.103 -0.126
34 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.102 0.066
35 265482_at AT2G15780 [Cupredoxin superfamily protein] 0.101 -0.128
36 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.101 0.032
37 255247_at AT4G07330 [CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-13 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.101 0.037
38 249819_at AT5G23640 unknown 0.101 0.110
39 254895_at AT4G11870 unknown 0.100 0.026
40 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 0.100 -0.118
41 255398_at AT4G03740 unknown 0.100 -0.126
42 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] 0.098 0.069
43 245545_at AT4G15280 UGT71B5, UDP-glucosyl transferase 71B5 0.098 0.225
44 245918_at AT5G28760 unknown 0.097 0.014
45 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.095 0.078
46 246815_at AT5G27220 [Frigida-like protein] 0.094 -0.070
47 261679_at AT1G47360 [copia-like retrotransposon family, has a 1.2e-307 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.094 0.129
48 257565_at AT3G28620 [Zinc finger, C3HC4 type (RING finger) family protein] 0.094 -0.109
49 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 0.094 -0.156
50 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -0.357 0.041
51 257336_at ATMG01410 ORF204, open reading frame 204 -0.165 0.130
52 256120_at AT1G18130 [Class II aaRS and biotin synthetases superfamily protein] -0.160 0.003
53 249302_at AT5G41450 [RING/U-box superfamily protein] -0.157 -0.113
54 245217_at AT1G38340 [gypsy-like retrotransposon family (Athila), has a 3.7e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.151 0.081
55 257034_at AT3G19184 [AP2/B3-like transcriptional factor family protein] -0.143 0.094
56 263038_at AT1G23270 unknown -0.136 -0.137
57 248089_at AT5G55080 AtRAN4, ras-related nuclear protein 4, RAN4, ras-related nuclear protein 4 -0.133 0.073
58 255534_at AT4G02190 [Cysteine/Histidine-rich C1 domain family protein] -0.131 0.010
59 262895_at AT1G59800 [Cullin family protein] -0.131 0.056
60 264033_at AT2G03580 [F-box family protein-related] -0.130 -0.125
61 266130_at AT2G44980 ASG3, ALTERED SEED GERMINATION 3, CHR10, chromatin remodeling 10 -0.128 0.048
62 256473_at AT1G42630 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G40080.1)] -0.127 0.053
63 250447_at AT5G10800 [RNA recognition motif (RRM)-containing protein] -0.126 0.091
64 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 -0.125 -0.134
65 261673_at AT1G18280 LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3 -0.125 0.007
66 248999_at AT5G44970 [Protein with RNI-like/FBD-like domains] -0.124 0.078
67 247915_at AT5G57570 [GCK domain-containing protein] -0.123 -0.086
68 262755_at AT1G16360 [LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein] -0.123 -0.052
69 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 -0.121 -0.067
70 265645_at AT2G27370 CASP3, Casparian strip membrane domain protein 3 -0.119 0.025
71 245402_at AT4G17585 [Aluminium activated malate transporter family protein] -0.119 -0.103
72 245068_at AT2G23260 UGT84B1, UDP-glucosyl transferase 84B1 -0.115 -0.077
73 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.115 -0.208
74 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.113 0.111
75 264659_at AT1G09930 ATOPT2, oligopeptide transporter 2, OPT2, oligopeptide transporter 2 -0.113 -0.050
76 264030_at AT2G03770 AtSULT202E1, SULT202E1, sulfotransferase 202E1 -0.112 -0.022
77 262015_at AT1G35663 unknown -0.110 -0.026
78 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.108 0.138
79 256006_at AT1G34070 unknown -0.107 -0.145
80 264527_at AT1G30760 [FAD-binding Berberine family protein] -0.106 -0.079
81 266755_at AT2G47150 [NAD(P)-binding Rossmann-fold superfamily protein] -0.106 0.049
82 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] -0.106 0.088
83 245504_at AT4G15660 [Thioredoxin superfamily protein] -0.105 0.052
84 261072_at AT1G07340 ATSTP2, sugar transporter 2, STP2, sugar transporter 2 -0.105 -0.636
85 253978_at AT4G26660 unknown -0.103 0.174
86 253365_at AT4G33170 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.102 -0.336
87 253718_at AT4G29450 [Leucine-rich repeat protein kinase family protein] -0.101 0.079
88 256126_at AT1G18050 [SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein] -0.098 -0.040
89 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.098 -0.130
90 245834_at AT1G42200 [CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-27 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.098 -0.014
91 250491_at AT5G09780 [Transcriptional factor B3 family protein] -0.096 0.084
92 263281_at AT2G14160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.096 0.248
93 250837_at AT5G04620 ATBIOF, biotin F, BIO4, biotin 4, BIOF, biotin F -0.096 -0.055
94 248013_at AT5G56330 ACA8, alpha carbonic anhydrase 8, ATACA8, A. THALIANA ALPHA CARBONIC ANHYDRASE 8 -0.095 -0.058
95 263702_at AT1G31240 [Bromodomain transcription factor] -0.095 -0.089
96 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] -0.094 0.054
97 258077_at AT3G26110 [Anther-specific protein agp1-like] -0.094 0.174