4.0:Information of module
12h-DC3000 avrRpm1
In comparison with 3x(p) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0040007 growth BP 4.043e-03
GO:0008643 carbohydrate transport BP 4.932e-03
GO:0048767 root hair elongation BP 6.343e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 2.484e-05
GO:0009813 flavonoid biosynthetic process BP 8.092e-05
GO:0009718 anthocyanin-containing compound biosynth... BP 2.071e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
12h-DC3000 avrRpm1		 Log2 signal ratio
3x(p)
1 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.253 -0.022
2 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.244 0.039
3 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.178 -0.000
4 255404_at AT4G03153 NET3B, Networked 3B 0.153 0.019
5 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 0.148 -0.042
6 254871_at AT4G11920 CCS52A2, cell cycle switch protein 52 A2, FZR1, FIZZY-RELATED 1 0.136 0.044
7 257998_at AT3G27510 [Cysteine/Histidine-rich C1 domain family protein] 0.132 -0.008
8 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.130 0.042
9 257438_at AT2G15325 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.130 0.019
10 258753_at AT3G09530 ATEXO70H3, exocyst subunit exo70 family protein H3, EXO70H3, exocyst subunit exo70 family protein H3 0.123 0.026
11 261732_at AT1G47770 [Beta-galactosidase related protein] 0.123 0.036
12 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 0.113 0.053
13 266154_at AT2G12190 [Cytochrome P450 superfamily protein] 0.111 0.033
14 265557_at AT2G05640 [pseudogene] 0.109 0.038
15 246700_at AT5G28030 DES1, L-cysteine desulfhydrase 1 0.109 -0.014
16 261684_at AT1G47400 unknown -0.352 0.025
17 250828_at AT5G05250 unknown -0.219 0.049
18 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.196 -0.031
19 245826_at AT1G57850 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.194 0.015
20 247915_at AT5G57570 [GCK domain-containing protein] -0.173 0.033
21 256926_at AT3G22540 unknown -0.160 0.053
22 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 -0.147 -0.036
23 247423_at AT5G62830 [F-box associated ubiquitination effector family protein] -0.143 -0.048
24 251359_at AT3G61170 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.140 0.018
25 265468_at AT2G37210 LOG3, LONELY GUY 3 -0.130 0.055
26 247967_at AT5G56620 anac099, NAC domain containing protein 99, NAC099, NAC domain containing protein 99 -0.129 0.036
27 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 -0.129 0.035
28 262755_at AT1G16360 [LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein] -0.122 0.043
29 248898_at AT5G46370 ATKCO2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, ATTPK2, TANDEM PORE K+ CHANNEL 2, KCO2, Ca2+ activated outward rectifying K+ channel 2 -0.121 0.054