4.0:Information of module
ms35 silique stage 7
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006096 glycolytic process BP 7.227e-03
GO:0016052 carbohydrate catabolic process BP 1.097e-02
GO:0009615 response to virus BP 1.565e-02
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 1.787e-31
GO:0045491 xylan metabolic process BP 7.817e-29
GO:0010410 hemicellulose metabolic process BP 1.250e-28
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ms35 silique stage 7		 Log2 signal ratio
Dark 3day ivd
1 261264_at AT1G26710 unknown 1.422 -0.071
2 262421_at AT1G50290 unknown 1.073 -0.143
3 249656_at AT5G37130 [Protein prenylyltransferase superfamily protein] 0.935 0.573
4 246731_at AT5G27630 ACBP5, acyl-CoA binding protein 5, AtACBP5 0.934 1.048
5 263023_at AT1G23960 unknown 0.867 1.002
6 250135_at AT5G15360 unknown 0.707 -0.071
7 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.640 -2.178
8 262458_at AT1G11280 [S-locus lectin protein kinase family protein] 0.610 -0.939
9 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.574 7.215
10 246870_at AT5G26030 ATFC-I, FC-I, FC1, ferrochelatase 1 0.486 -0.442
11 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.460 -0.071
12 246542_at AT5G15020 SNL2, SIN3-like 2 0.449 0.998
13 259100_at AT3G04880 DRT102, DNA-DAMAGE-REPAIR/TOLERATION 2 0.442 0.897
14 250045_at AT5G17700 [MATE efflux family protein] 0.428 -1.771
15 252347_at AT3G48130 RSU1 0.423 -0.071
16 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 0.419 3.888
17 258764_at AT3G10720 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.411 -0.389
18 250530_at AT5G08630 [DDT domain-containing protein] 0.384 1.192
19 246080_at AT5G20460 unknown 0.380 -0.071
20 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 0.375 3.018
21 252676_at AT3G44280 unknown 0.375 -0.014
22 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] 0.360 -2.112
23 247754_at AT5G59080 unknown 0.354 -0.751
24 249386_at AT5G40060 [Disease resistance protein (NBS-LRR class) family] 0.336 -2.438
25 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] 0.318 1.563
26 250699_at AT5G06820 SRF2, STRUBBELIG-receptor family 2 0.304 2.123
27 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 0.298 -0.074
28 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] 0.280 -0.534
29 257136_at AT3G12890 ASML2, activator of spomin::LUC2 0.272 -0.071
30 257766_at AT3G23030 IAA2, indole-3-acetic acid inducible 2 0.269 -1.536
31 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 0.266 6.413
32 252351_at AT3G48210 unknown 0.258 2.445
33 247456_at AT5G62160 AtZIP12, zinc transporter 12 precursor, ZIP12, zinc transporter 12 precursor 0.257 -0.071
34 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.249 -5.587
35 265771_at AT2G48030 [DNAse I-like superfamily protein] 0.233 1.210
36 249493_at AT5G39080 [HXXXD-type acyl-transferase family protein] 0.232 -2.952
37 265723_at AT2G32140 [transmembrane receptors] 0.230 4.213
38 252315_at AT3G48690 ATCXE12, ARABIDOPSIS THALIANA CARBOXYESTERASE 12, CXE12 0.227 1.578
39 247967_at AT5G56620 anac099, NAC domain containing protein 99, NAC099, NAC domain containing protein 99 0.222 -1.299
40 262302_at AT1G70910 DEP, DESPIERTO 0.221 -0.071
41 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.212 -0.071
42 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.209 2.261
43 266125_at AT2G45050 GATA2, GATA transcription factor 2 0.208 -2.263
44 261940_at AT1G22520 unknown 0.203 -2.040
45 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -1.410 1.005
46 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -1.408 -6.438
47 266244_at AT2G27740 unknown -1.400 -4.824
48 257757_at AT3G18660 GUX1, glucuronic acid substitution of xylan 1, PGSIP1, plant glycogenin-like starch initiation protein 1 -1.364 -4.005
49 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 -1.338 -8.151
50 263028_at AT1G24030 [Protein kinase superfamily protein] -1.273 0.374
51 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -1.224 -3.434
52 251723_at AT3G56230 [BTB/POZ domain-containing protein] -1.177 -3.456
53 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -1.121 -4.720
54 247030_at AT5G67210 IRX15-L, IRX15-LIKE -1.116 -3.410
55 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -1.110 -2.095
56 252944_at AT4G39320 [microtubule-associated protein-related] -1.069 -2.121
57 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -1.044 -4.155
58 259606_at AT1G27920 MAP65-8, microtubule-associated protein 65-8 -1.006 -0.697
59 254277_at AT4G22680 AtMYB85, myb domain protein 85, MYB85, myb domain protein 85 -0.991 -2.051
60 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.986 -2.393
61 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.982 -5.898
62 262438_at AT1G47410 unknown -0.980 -2.754
63 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.976 2.759
64 256367_at AT1G66810 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.952 -1.318
65 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.931 -5.505
66 247590_at AT5G60720 unknown -0.931 -3.744
67 253877_at AT4G27435 unknown -0.929 -1.956
68 255976_at AT1G22010 unknown -0.905 -0.071
69 258267_at AT3G15870 [Fatty acid desaturase family protein] -0.894 -0.071
70 250120_at AT5G16490 RIC4, ROP-interactive CRIB motif-containing protein 4 -0.850 -2.787
71 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 -0.840 -5.497
72 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.823 -3.618
73 252253_at AT3G49300 [proline-rich family protein] -0.798 0.200
74 267037_at AT2G38320 TBL34, TRICHOME BIREFRINGENCE-LIKE 34 -0.792 -6.006
75 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 -0.779 -4.787
76 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] -0.774 -2.839
77 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.758 1.077
78 266196_at AT2G39110 [Protein kinase superfamily protein] -0.752 2.053
79 253667_at AT4G30170 [Peroxidase family protein] -0.750 -0.071
80 257502_at AT1G78110 unknown -0.748 -0.190
81 248750_at AT5G47530 [Auxin-responsive family protein] -0.742 -0.603
82 253798_at AT4G28500 ANAC073, NAC domain containing protein 73, NAC073, NAC domain containing protein 73, SND2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2 -0.739 -3.581
83 251303_at AT3G61910 ANAC066, NAC domain protein 66, NAC066, NAC domain protein 66, NST2, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2 -0.719 -0.071
84 245174_at AT2G47500 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.705 -3.109
85 262569_at AT1G15180 [MATE efflux family protein] -0.699 -0.495
86 248977_at AT5G45020 [Glutathione S-transferase family protein] -0.673 -2.803
87 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 -0.665 -2.288