4.0:Information of module
ms35 silique stage 5
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010073 meristem maintenance BP 3.164e-04
GO:0071840 cellular component organization or bioge... BP 3.276e-04
GO:0071704 organic substance metabolic process BP 5.551e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010413 glucuronoxylan metabolic process BP 1.222e-09
GO:0045492 xylan biosynthetic process BP 1.481e-09
GO:0010410 hemicellulose metabolic process BP 2.044e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ms35 silique stage 5		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 262421_at AT1G50290 unknown 1.009 0.066
2 246731_at AT5G27630 ACBP5, acyl-CoA binding protein 5, AtACBP5 0.967 0.071
3 247760_at AT5G59130 [Subtilase family protein] 0.824 0.038
4 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 0.808 -0.036
5 263023_at AT1G23960 unknown 0.792 -0.104
6 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 0.781 -0.255
7 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 0.638 -0.080
8 264862_at AT1G24330 [ARM repeat superfamily protein] 0.612 -0.200
9 249850_at AT5G23240 DJC76, DNA J protein C76 0.611 0.076
10 250135_at AT5G15360 unknown 0.607 -0.083
11 267472_at AT2G02850 ARPN, plantacyanin 0.585 0.160
12 262458_at AT1G11280 [S-locus lectin protein kinase family protein] 0.564 0.075
13 249614_at AT5G37300 WSD1 0.541 0.119
14 253850_at AT4G28090 sks10, SKU5 similar 10 0.540 0.351
15 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.538 0.117
16 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 0.537 -0.021
17 262601_at AT1G15310 ATHSRP54A, signal recognition particle 54 kDa subunit, SRP54-1, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT 0.534 -0.082
18 251967_at AT3G53390 [Transducin/WD40 repeat-like superfamily protein] 0.521 0.036
19 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.507 0.146
20 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.504 -0.011
21 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.463 0.178
22 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.456 -0.012
23 248624_at AT5G48790 unknown 0.450 -0.032
24 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 0.448 -0.055
25 259100_at AT3G04880 DRT102, DNA-DAMAGE-REPAIR/TOLERATION 2 0.432 -0.075
26 257543_at AT3G28960 [Transmembrane amino acid transporter family protein] 0.432 -0.003
27 250822_at AT5G05230 [RING/U-box superfamily protein] 0.431 0.087
28 266354_at AT2G01500 HOS9, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, PFS2, PRETTY FEW SEEDS 2, WOX6, WUSCHEL RELATED HOMEOBOX 6 0.392 0.028
29 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.345 0.223
30 262181_at AT1G78060 [Glycosyl hydrolase family protein] 0.340 -0.033
31 255818_at AT2G33570 GALS1, galactan synthase 1 0.338 -0.039
32 251995_at AT3G52940 ELL1, EXTRA-LONG-LIFESPAN 1, FK, FACKEL, HYD2 0.321 -0.058
33 245648_at AT1G24938 unknown 0.313 -0.005
34 266526_at AT2G16980 [Major facilitator superfamily protein] 0.310 0.254
35 257229_at AT3G16490 IQD26, IQ-domain 26 0.305 0.120
36 250208_at AT5G14000 anac084, NAC domain containing protein 84, NAC084, NAC domain containing protein 84 0.294 -0.018
37 246994_at AT5G67460 [O-Glycosyl hydrolases family 17 protein] 0.285 -0.123
38 250398_at AT5G11000 unknown 0.285 -0.027
39 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 0.272 -0.212
40 245110_at AT2G41550 [Rho termination factor] 0.261 0.104
41 245052_at AT2G26440 PME12, pectin methylesterase 12 0.256 -0.034
42 250210_at AT5G13890 unknown 0.254 0.082
43 259032_at AT3G09380 unknown 0.252 0.034
44 253582_at AT4G30670 [Putative membrane lipoprotein] 0.250 0.007
45 254230_at AT4G23660 AtPPT1, polyprenyltransferase 1, PPT1, polyprenyltransferase 1 0.249 -0.017
46 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 -1.225 0.106
47 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -1.216 0.018
48 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 -1.181 0.059
49 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -1.052 -0.052
50 263028_at AT1G24030 [Protein kinase superfamily protein] -0.947 -0.037
51 259116_at AT3G01350 [Major facilitator superfamily protein] -0.899 0.024
52 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 -0.834 -0.084
53 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -0.770 -0.074
54 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.769 -0.255
55 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.756 -0.069
56 259149_at AT3G10340 PAL4, phenylalanine ammonia-lyase 4 -0.707 -0.082
57 247030_at AT5G67210 IRX15-L, IRX15-LIKE -0.676 -0.412
58 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -0.670 -0.435
59 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.660 -0.192
60 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.646 0.124
61 254277_at AT4G22680 AtMYB85, myb domain protein 85, MYB85, myb domain protein 85 -0.634 0.072
62 244961_at ATCG01040 YCF5 -0.598 -0.018
63 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.565 -0.024
64 245712_at AT5G04360 ATLDA, limit dextrinase, ATPU1, PULLULANASE 1, LDA, limit dextrinase, PU1, PULLULANASE 1 -0.553 -0.037
65 249996_at AT5G18600 [Thioredoxin superfamily protein] -0.533 -0.236
66 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.527 0.085
67 265511_at AT2G05540 [Glycine-rich protein family] -0.519 -0.139
68 259596_at AT1G28130 GH3.17 -0.509 -0.114
69 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.495 0.007
70 245101_at AT2G40890 CYP98A3, cytochrome P450, family 98, subfamily A, polypeptide 3 -0.484 -0.052
71 258047_at AT3G21240 4CL2, 4-coumarate:CoA ligase 2, AT4CL2 -0.483 0.059
72 253887_at AT4G27730 ATOPT6, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, OPT6, oligopeptide transporter 1 -0.456 0.168
73 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.455 0.098
74 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.447 -0.013
75 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 -0.430 -0.060
76 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.429 -0.091
77 263799_at AT2G24550 unknown -0.425 0.030
78 257502_at AT1G78110 unknown -0.421 0.167
79 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.417 0.423
80 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 -0.401 -0.018
81 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.388 -0.065
82 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.383 0.176
83 246842_at AT5G26731 unknown -0.382 -0.114
84 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.376 0.186
85 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.368 0.178
86 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.357 -0.015
87 258201_at AT3G13910 unknown -0.348 0.019
88 264424_at AT1G61740 [Sulfite exporter TauE/SafE family protein] -0.344 -0.041
89 267036_at AT2G38465 unknown -0.341 -0.112