4.0:Information of module
toc1-1-85hr
In comparison with Chemically help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 2.391e-05
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 2.391e-05
GO:0032958 inositol phosphate biosynthetic process BP 2.967e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010015 root morphogenesis BP 1.326e-26
GO:0010054 trichoblast differentiation BP 1.676e-26
GO:0010053 root epidermal cell differentiation BP 7.139e-26
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
toc1-1-85hr		 Log2 signal ratio
Chemically
1 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.718 -0.118
2 250099_at AT5G17300 RVE1, REVEILLE 1 0.516 -0.250
3 258349_at AT3G17609 HYH, HY5-homolog 0.476 -0.095
4 265892_at AT2G15020 unknown 0.474 -0.120
5 256874_at AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 0.391 -0.086
6 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.373 0.023
7 258894_at AT3G05650 AtRLP32, receptor like protein 32, RLP32, receptor like protein 32 0.336 -0.038
8 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.322 -0.075
9 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 0.318 -0.041
10 259927_at AT1G75100 JAC1, J-domain protein required for chloroplast accumulation response 1 0.298 -0.068
11 264694_at AT1G70250 [receptor serine/threonine kinase, putative] 0.275 -0.027
12 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] 0.271 0.007
13 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.271 -0.077
14 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.269 -0.032
15 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] 0.260 -0.073
16 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C 0.247 -0.133
17 260996_at AT1G12210 RFL1, RPS5-like 1 0.243 0.025
18 260603_at AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.243 -0.048
19 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.238 -0.129
20 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.226 -0.068
21 261618_at AT1G33110 [MATE efflux family protein] 0.223 -0.010
22 253425_at AT4G32190 [Myosin heavy chain-related protein] 0.207 -0.059
23 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.202 0.006
24 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.201 -0.040
25 249112_at AT5G43780 APS4 0.200 -0.025
26 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 0.199 -0.021
27 256483_at AT1G31410 ENF2, ENLARGED FIL EXPRESSION DOMAIN 2 0.199 0.006
28 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 0.197 0.037
29 244983_at ATCG00790 RPL16, ribosomal protein L16 0.194 0.116
30 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 0.193 0.106
31 259065_at AT3G07520 ATGLR1.4, GLR1.4, glutamate receptor 1.4 0.190 0.006
32 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.184 -0.039
33 258726_at AT3G11745 unknown 0.183 -0.009
34 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 0.183 -0.048
35 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 0.181 -0.027
36 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.180 0.026
37 259762_at AT1G77600 [ARM repeat superfamily protein] 0.178 0.060
38 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.177 0.060
39 253042_at AT4G37550 [Acetamidase/Formamidase family protein] 0.174 -0.018
40 266862_at AT2G26950 AtMYB104, myb domain protein 104, MYB104, myb domain protein 104 0.173 0.036
41 249963_at AT5G19000 ATBPM1, BTB-POZ AND MATH DOMAIN 1, BPM1, BTB-POZ and MATH domain 1 0.171 -0.002
42 253814_at AT4G28290 unknown 0.171 -0.101
43 258677_at AT3G08730 ATPK1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ATPK6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATS6K1, PK1, protein-serine kinase 1, PK6, ROTEIN-SERINE KINASE 6, S6K1, P70 RIBOSOMAL S6 KINASE 0.171 -0.059
44 261089_at AT1G07570 APK1, APK1A 0.169 0.001
45 259460_at AT1G44000 unknown 0.168 -0.067
46 259275_at AT3G01060 unknown 0.168 0.031
47 263374_at AT2G20560 [DNAJ heat shock family protein] 0.166 0.004
48 248189_at AT5G54090 [DNA mismatch repair protein MutS, type 2] 0.163 -0.030
49 259856_at AT1G68440 unknown 0.162 -0.111
50 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.160 0.073
51 260137_at AT1G66330 [senescence-associated family protein] 0.160 -0.023
52 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.159 0.006
53 252089_at AT3G52110 unknown 0.157 0.026
54 246370_at AT1G51920 unknown 0.157 -0.000
55 256032_at AT1G34090 [copia-like retrotransposon family, has a 8.8e-131 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)] 0.155 0.020
56 246058_at AT5G08430 [SWIB/MDM2 domain] 0.155 -0.028
57 250613_at AT5G07240 IQD24, IQ-domain 24 0.152 0.033
58 247560_at AT5G61090 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.152 0.002
59 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.152 0.059
60 260633_at AT1G62400 HT1, high leaf temperature 1 0.150 -0.011
61 252309_at AT3G49340 [Cysteine proteinases superfamily protein] 0.149 0.029
62 249321_at AT5G40920 [pseudogene] 0.149 0.079
63 247594_at AT5G60800 [Heavy metal transport/detoxification superfamily protein ] 0.149 0.009
64 256425_at AT1G33560 ADR1, ACTIVATED DISEASE RESISTANCE 1 0.148 0.033
65 260769_at AT1G49010 [Duplicated homeodomain-like superfamily protein] 0.147 -0.005
66 254068_at AT4G25450 ABCB28, ATP-binding cassette B28, ATNAP8, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, NAP8, non-intrinsic ABC protein 8 0.146 0.021
67 247694_at AT5G59750 AtRIBA3, RIBA3, homolog of ribA 3 0.145 0.004
68 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 0.142 0.013
69 250480_at AT5G10290 [leucine-rich repeat transmembrane protein kinase family protein] 0.140 0.019
70 254093_at AT4G25110 AtMC2, metacaspase 2, AtMCP1c, metacaspase 1c, MC2, metacaspase 2, MCP1c, metacaspase 1c 0.140 0.018
71 255568_at AT4G01250 AtWRKY22, WRKY22 0.136 0.029
72 253131_at AT4G35550 ATWOX13, HB-4, WOX13, WUSCHEL related homeobox 13 0.135 0.091
73 248595_at AT5G49230 HRB1, HYPERSENSITIVE TO RED AND BLUE 0.135 0.002
74 264435_at AT1G10360 ATGSTU18, glutathione S-transferase TAU 18, GST29, GLUTATHIONE S-TRANSFERASE 29, GSTU18, glutathione S-transferase TAU 18 0.135 -0.040
75 248988_at AT5G45190 [Cyclin family protein] 0.135 0.018
76 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved 0.133 -0.018
77 264496_at AT1G27285 [copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.132 -0.033
78 267445_at AT2G33680 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.131 0.016
79 253434_at AT4G32500 AKT5, K+ transporter 5, KT5, K+ transporter 5 0.131 0.027
80 246983_at AT5G67200 [Leucine-rich repeat protein kinase family protein] 0.130 0.080
81 246840_at AT5G26610 [D111/G-patch domain-containing protein] 0.130 0.008
82 261157_at AT1G34510 [Peroxidase superfamily protein] -1.076 -0.817
83 253998_at AT4G26010 [Peroxidase superfamily protein] -1.031 -0.465
84 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -1.026 -0.421
85 246652_at AT5G35190 EXT13, extensin 13 -0.994 -0.909
86 246825_at AT5G26260 [TRAF-like family protein] -0.970 -0.074
87 250778_at AT5G05500 MOP10 -0.966 -0.472
88 255516_at AT4G02270 RHS13, root hair specific 13 -0.963 -0.428
89 246991_at AT5G67400 RHS19, root hair specific 19 -0.903 -0.418
90 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.880 -0.513
91 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.878 -0.621
92 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.873 -0.744
93 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -0.868 0.109
94 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.852 -0.287
95 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.850 -0.622
96 249934_at AT5G22410 RHS18, root hair specific 18 -0.805 -0.738
97 252238_at AT3G49960 [Peroxidase superfamily protein] -0.804 -0.523
98 265102_at AT1G30870 [Peroxidase superfamily protein] -0.803 -0.356
99 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.783 -0.685
100 259276_at AT3G01190 [Peroxidase superfamily protein] -0.771 -0.271
101 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.739 -0.284
102 250157_at AT5G15180 [Peroxidase superfamily protein] -0.738 -0.228
103 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.735 -0.066
104 250059_at AT5G17820 [Peroxidase superfamily protein] -0.719 -0.244
105 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.698 -0.117
106 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.693 -0.107
107 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.686 -0.058
108 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.683 -0.626
109 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.675 -0.362
110 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.660 -0.124
111 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.659 -0.658
112 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.645 -0.547
113 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.644 -0.456
114 248178_at AT5G54370 [Late embryogenesis abundant (LEA) protein-related] -0.629 -0.291
115 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.611 0.211
116 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.604 -0.173
117 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.599 -0.522
118 253667_at AT4G30170 [Peroxidase family protein] -0.586 -0.253
119 260527_at AT2G47270 UPB1, UPBEAT1 -0.569 0.040
120 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.561 -0.250
121 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.556 -0.402
122 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.543 -0.164
123 247094_at AT5G66280 GMD1, GDP-D-mannose 4,6-dehydratase 1 -0.536 -0.190
124 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 -0.535 -0.073
125 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.523 -0.092
126 253613_at AT4G30320 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.512 -0.483
127 261999_at AT1G33800 AtGXMT1, GXM1, glucuronoxylan methyltransferase 1, GXMT1, glucuronoxylan methyltransferase 1 -0.504 -0.062
128 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.502 -0.136
129 267409_at AT2G34910 unknown -0.502 -0.405
130 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.499 -0.078
131 249009_at AT5G44610 MAP18, microtubule-associated protein 18, PCAP2, PLASMA MEMBRANE ASSOCIATED CA2+-BINDING PROTEIN-2 -0.495 -0.254
132 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.490 -0.322
133 250469_at AT5G10130 [Pollen Ole e 1 allergen and extensin family protein] -0.486 -0.111
134 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.482 -0.420
135 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.481 -0.063
136 258765_at AT3G10710 RHS12, root hair specific 12 -0.472 -0.534
137 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.464 -0.260
138 249756_at AT5G24313 unknown -0.457 -0.529
139 250683_x_at AT5G06640 EXT10, extensin 10 -0.452 -0.284
140 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.450 -0.328
141 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.448 0.025
142 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.446 -0.339
143 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B -0.442 -0.107
144 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 -0.417 0.023
145 262317_at AT2G48140 EDA4, embryo sac development arrest 4 -0.412 -0.083
146 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.400 -0.467
147 250224_at AT5G14150 unknown -0.397 -0.041
148 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] -0.396 0.014
149 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.377 -0.157
150 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] -0.375 -0.282
151 266591_at AT2G46225 ABIL1, ABI-1-like 1 -0.372 0.033
152 249358_at AT5G40510 [Sucrase/ferredoxin-like family protein] -0.371 -0.168
153 266356_at AT2G32300 UCC1, uclacyanin 1 -0.370 -0.502
154 245139_at AT2G45430 AHL22, AT-hook motif nuclear-localized protein 22 -0.370 -0.054
155 260035_at AT1G68850 [Peroxidase superfamily protein] -0.369 -0.043
156 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.364 0.076
157 257924_at AT3G23190 [HR-like lesion-inducing protein-related] -0.358 -0.240
158 248626_at AT5G48940 [Leucine-rich repeat transmembrane protein kinase family protein] -0.356 0.047
159 251298_at AT3G62040 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.353 -0.052
160 266920_at AT2G45750 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.351 -0.224
161 265052_at AT1G51990 [O-methyltransferase family protein] -0.348 0.048