4.0:Information of module
toc1-1-73hr
In comparison with siliques AtHb1 control help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 5.889e-09
GO:0019252 starch biosynthetic process BP 2.893e-07
GO:0044262 cellular carbohydrate metabolic process BP 5.444e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 1.156e-20
GO:0010054 trichoblast differentiation BP 1.567e-20
GO:0090627 plant epidermal cell differentiation BP 3.646e-20
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
toc1-1-73hr		 Log2 signal ratio
siliques AtHb1 control
1 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.894 -0.013
2 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.648 -0.071
3 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.622 -0.077
4 263495_at AT2G42530 COR15B, cold regulated 15b 0.423 0.025
5 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.383 0.004
6 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.369 0.013
7 262452_at AT1G11210 unknown 0.362 -0.072
8 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.340 0.111
9 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.337 -0.044
10 250381_at AT5G11610 [Exostosin family protein] 0.333 0.008
11 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.321 0.137
12 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.318 0.039
13 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.314 0.186
14 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.303 -0.097
15 246095_at AT5G19310 CHR23, chromatin remodeling 23 0.281 0.388
16 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 0.281 -0.183
17 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.272 0.199
18 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 0.269 0.294
19 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.256 0.013
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.256 0.014
21 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.243 0.118
22 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.240 0.136
23 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 0.234 0.063
24 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 0.232 -0.076
25 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.231 -0.022
26 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.229 0.430
27 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.228 0.231
28 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.228 0.144
29 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 0.223 0.247
30 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 0.222 -0.001
31 261216_at AT1G33030 [O-methyltransferase family protein] 0.219 0.076
32 263182_at AT1G05575 unknown 0.218 0.294
33 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.217 0.007
34 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.215 0.067
35 248321_at AT5G52740 [Copper transport protein family] 0.211 -0.035
36 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] 0.208 0.098
37 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.206 -0.084
38 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.205 0.039
39 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.203 0.076
40 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.203 -0.074
41 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.200 0.084
42 267268_at AT2G02570 [nucleic acid binding] 0.200 -0.018
43 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 0.198 0.299
44 259534_at AT1G12290 [Disease resistance protein (CC-NBS-LRR class) family] 0.187 -0.004
45 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.184 0.022
46 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.181 -0.039
47 245600_at AT4G14230 unknown 0.179 -0.048
48 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.173 -0.037
49 257191_at AT3G13175 unknown 0.173 0.197
50 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 0.169 0.198
51 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.169 -0.011
52 254043_at AT4G25990 CIL 0.169 -0.058
53 266140_at AT2G28120 [Major facilitator superfamily protein] 0.167 -0.076
54 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.167 0.106
55 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] 0.167 0.039
56 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.163 0.097
57 247216_at AT5G64860 DPE1, disproportionating enzyme 0.162 0.068
58 260671_at AT1G19310 [RING/U-box superfamily protein] 0.161 -0.021
59 247444_at AT5G62630 HIPL2, hipl2 protein precursor 0.161 0.128
60 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 0.159 -0.002
61 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.156 -0.055
62 262232_at AT1G68600 [Aluminium activated malate transporter family protein] 0.156 0.135
63 257473_at AT1G33840 unknown 0.155 -0.086
64 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 0.155 0.156
65 249059_at AT5G44530 [Subtilase family protein] 0.154 -0.015
66 263118_at AT1G03090 MCCA 0.153 0.150
67 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 0.152 0.155
68 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.152 0.133
69 250604_at AT5G07830 AtGUS2, glucuronidase 2, GUS2, glucuronidase 2 0.151 0.085
70 253998_at AT4G26010 [Peroxidase superfamily protein] -0.967 0.007
71 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.933 -0.039
72 261157_at AT1G34510 [Peroxidase superfamily protein] -0.886 -0.006
73 255516_at AT4G02270 RHS13, root hair specific 13 -0.861 -0.033
74 250778_at AT5G05500 MOP10 -0.805 -0.036
75 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.748 -0.072
76 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.744 -0.048
77 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.738 -0.012
78 246991_at AT5G67400 RHS19, root hair specific 19 -0.733 -0.080
79 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.727 -0.031
80 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.714 -0.003
81 253667_at AT4G30170 [Peroxidase family protein] -0.677 -0.009
82 265102_at AT1G30870 [Peroxidase superfamily protein] -0.653 -0.038
83 252238_at AT3G49960 [Peroxidase superfamily protein] -0.621 -0.045
84 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.612 0.030
85 259276_at AT3G01190 [Peroxidase superfamily protein] -0.610 -0.061
86 246825_at AT5G26260 [TRAF-like family protein] -0.591 -0.041
87 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.573 -0.054
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.561 -0.015
89 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.533 0.013
90 249934_at AT5G22410 RHS18, root hair specific 18 -0.519 0.011
91 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.471 -0.027
92 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.471 -0.028
93 253582_at AT4G30670 [Putative membrane lipoprotein] -0.466 -0.055
94 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.462 -0.081
95 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.462 -0.089
96 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.410 -0.157
97 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.407 -0.004
98 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.391 -0.003
99 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.386 -0.119
100 250696_at AT5G06790 unknown -0.374 -0.074
101 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.367 0.009
102 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.361 0.032
103 257924_at AT3G23190 [HR-like lesion-inducing protein-related] -0.357 -0.030
104 266591_at AT2G46225 ABIL1, ABI-1-like 1 -0.354 -0.054
105 258765_at AT3G10710 RHS12, root hair specific 12 -0.348 -0.072
106 251918_at AT3G54040 [PAR1 protein] -0.326 -0.336
107 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.322 -0.040
108 250469_at AT5G10130 [Pollen Ole e 1 allergen and extensin family protein] -0.322 0.013
109 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.319 0.002
110 246125_at AT5G19875 unknown -0.302 -0.043
111 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.292 -0.085
112 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.292 -0.142
113 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 -0.291 -0.051
114 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.291 -0.006
115 250323_at AT5G12880 [proline-rich family protein] -0.289 -0.028
116 246149_at AT5G19890 [Peroxidase superfamily protein] -0.288 -0.058
117 247024_at AT5G66985 unknown -0.286 0.076
118 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.285 -0.095
119 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.278 -0.022
120 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.278 -0.007
121 260527_at AT2G47270 UPB1, UPBEAT1 -0.276 0.171
122 256674_at AT3G52360 unknown -0.276 0.004
123 245113_at AT2G41660 MIZ1, mizu-kussei 1 -0.276 -0.138
124 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.272 -0.059
125 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E -0.271 -0.079
126 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.266 -0.062
127 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 -0.265 -0.013
128 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] -0.261 0.013
129 266581_at AT2G46140 [Late embryogenesis abundant protein] -0.260 -0.090
130 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.259 0.100
131 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.258 -0.224
132 259478_at AT1G18980 [RmlC-like cupins superfamily protein] -0.256 -0.050
133 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 -0.254 -0.022
134 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 -0.254 -0.068
135 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.252 0.051
136 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.249 -0.105
137 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.246 0.027