4.0:Information of module
toc1-1-73hr
In comparison with protoplasted roots pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 5.889e-09
GO:0019252 starch biosynthetic process BP 2.893e-07
GO:0044262 cellular carbohydrate metabolic process BP 5.444e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 1.156e-20
GO:0010054 trichoblast differentiation BP 1.567e-20
GO:0090627 plant epidermal cell differentiation BP 3.646e-20
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
toc1-1-73hr		 Log2 signal ratio
protoplasted roots pH4.6
1 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.894 -0.228
2 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.648 -0.223
3 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.622 -0.019
4 263495_at AT2G42530 COR15B, cold regulated 15b 0.423 -0.091
5 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.383 -0.037
6 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.369 -0.022
7 262452_at AT1G11210 unknown 0.362 0.021
8 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.340 0.116
9 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.337 -0.181
10 250381_at AT5G11610 [Exostosin family protein] 0.333 -0.070
11 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.321 0.237
12 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.318 -0.008
13 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.314 0.144
14 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.303 0.047
15 246095_at AT5G19310 CHR23, chromatin remodeling 23 0.281 0.323
16 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 0.281 -0.185
17 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.272 0.374
18 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 0.269 0.502
19 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.256 -0.177
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.256 -0.359
21 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.243 0.299
22 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.240 0.306
23 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 0.234 -0.045
24 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 0.232 0.049
25 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.231 0.700
26 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.229 0.098
27 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.228 0.043
28 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.228 0.172
29 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 0.223 0.180
30 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 0.222 0.320
31 261216_at AT1G33030 [O-methyltransferase family protein] 0.219 0.235
32 263182_at AT1G05575 unknown 0.218 0.349
33 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.217 0.287
34 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.215 0.628
35 248321_at AT5G52740 [Copper transport protein family] 0.211 -0.100
36 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] 0.208 0.274
37 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.206 0.138
38 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.205 -0.241
39 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.203 -0.401
40 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.203 -0.493
41 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.200 -0.311
42 267268_at AT2G02570 [nucleic acid binding] 0.200 0.006
43 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 0.198 -0.124
44 259534_at AT1G12290 [Disease resistance protein (CC-NBS-LRR class) family] 0.187 -0.260
45 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.184 -0.586
46 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.181 0.088
47 245600_at AT4G14230 unknown 0.179 -0.049
48 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.173 0.047
49 257191_at AT3G13175 unknown 0.173 -0.113
50 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 0.169 0.377
51 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.169 0.171
52 254043_at AT4G25990 CIL 0.169 -0.017
53 266140_at AT2G28120 [Major facilitator superfamily protein] 0.167 0.060
54 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.167 0.092
55 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] 0.167 -0.104
56 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.163 0.130
57 247216_at AT5G64860 DPE1, disproportionating enzyme 0.162 0.287
58 260671_at AT1G19310 [RING/U-box superfamily protein] 0.161 0.172
59 247444_at AT5G62630 HIPL2, hipl2 protein precursor 0.161 -0.042
60 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 0.159 0.239
61 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.156 0.261
62 262232_at AT1G68600 [Aluminium activated malate transporter family protein] 0.156 -0.009
63 257473_at AT1G33840 unknown 0.155 -0.174
64 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 0.155 -0.134
65 249059_at AT5G44530 [Subtilase family protein] 0.154 -0.144
66 263118_at AT1G03090 MCCA 0.153 0.020
67 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 0.152 0.131
68 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.152 -0.202
69 250604_at AT5G07830 AtGUS2, glucuronidase 2, GUS2, glucuronidase 2 0.151 0.184
70 253998_at AT4G26010 [Peroxidase superfamily protein] -0.967 -0.637
71 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.933 -0.785
72 261157_at AT1G34510 [Peroxidase superfamily protein] -0.886 -0.470
73 255516_at AT4G02270 RHS13, root hair specific 13 -0.861 -0.689
74 250778_at AT5G05500 MOP10 -0.805 -0.799
75 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.748 -0.660
76 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.744 -0.483
77 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.738 -0.791
78 246991_at AT5G67400 RHS19, root hair specific 19 -0.733 -0.654
79 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.727 -0.737
80 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.714 -0.139
81 253667_at AT4G30170 [Peroxidase family protein] -0.677 -0.121
82 265102_at AT1G30870 [Peroxidase superfamily protein] -0.653 -0.474
83 252238_at AT3G49960 [Peroxidase superfamily protein] -0.621 -0.744
84 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.612 -0.795
85 259276_at AT3G01190 [Peroxidase superfamily protein] -0.610 -0.238
86 246825_at AT5G26260 [TRAF-like family protein] -0.591 -0.329
87 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.573 -0.520
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.561 -0.027
89 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.533 -0.516
90 249934_at AT5G22410 RHS18, root hair specific 18 -0.519 -0.578
91 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.471 -0.287
92 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.471 -0.231
93 253582_at AT4G30670 [Putative membrane lipoprotein] -0.466 -0.146
94 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.462 -0.717
95 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.462 -0.494
96 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.410 -0.116
97 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.407 -0.137
98 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.391 -0.036
99 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.386 -0.750
100 250696_at AT5G06790 unknown -0.374 -0.022
101 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.367 -0.055
102 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.361 -0.525
103 257924_at AT3G23190 [HR-like lesion-inducing protein-related] -0.357 -0.324
104 266591_at AT2G46225 ABIL1, ABI-1-like 1 -0.354 0.014
105 258765_at AT3G10710 RHS12, root hair specific 12 -0.348 -0.737
106 251918_at AT3G54040 [PAR1 protein] -0.326 -0.616
107 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.322 -0.770
108 250469_at AT5G10130 [Pollen Ole e 1 allergen and extensin family protein] -0.322 -0.125
109 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.319 0.851
110 246125_at AT5G19875 unknown -0.302 -0.403
111 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.292 -0.803
112 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.292 -0.197
113 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 -0.291 -0.348
114 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.291 -0.820
115 250323_at AT5G12880 [proline-rich family protein] -0.289 -0.385
116 246149_at AT5G19890 [Peroxidase superfamily protein] -0.288 -0.062
117 247024_at AT5G66985 unknown -0.286 -0.748
118 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.285 -0.125
119 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.278 -0.298
120 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.278 -0.045
121 260527_at AT2G47270 UPB1, UPBEAT1 -0.276 0.160
122 256674_at AT3G52360 unknown -0.276 -0.016
123 245113_at AT2G41660 MIZ1, mizu-kussei 1 -0.276 -0.166
124 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.272 0.067
125 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E -0.271 -0.118
126 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.266 -0.006
127 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 -0.265 -0.994
128 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] -0.261 0.125
129 266581_at AT2G46140 [Late embryogenesis abundant protein] -0.260 -0.201
130 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.259 -0.583
131 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.258 -0.097
132 259478_at AT1G18980 [RmlC-like cupins superfamily protein] -0.256 -0.203
133 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 -0.254 -0.282
134 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 -0.254 -0.466
135 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.252 -0.459
136 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.249 -0.425
137 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.246 0.053