4.0:Information of module
toc1-1-73hr
In comparison with phyB Rc50 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 5.889e-09
GO:0019252 starch biosynthetic process BP 2.893e-07
GO:0044262 cellular carbohydrate metabolic process BP 5.444e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 1.156e-20
GO:0010054 trichoblast differentiation BP 1.567e-20
GO:0090627 plant epidermal cell differentiation BP 3.646e-20
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
toc1-1-73hr		 Log2 signal ratio
phyB Rc50
1 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.894 0.242
2 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.648 0.021
3 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.622 -0.048
4 263495_at AT2G42530 COR15B, cold regulated 15b 0.423 0.082
5 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.383 0.053
6 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.369 0.009
7 262452_at AT1G11210 unknown 0.362 0.088
8 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.340 0.167
9 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.337 0.036
10 250381_at AT5G11610 [Exostosin family protein] 0.333 0.087
11 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.321 -0.020
12 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.318 0.105
13 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.314 -0.095
14 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.303 0.050
15 246095_at AT5G19310 CHR23, chromatin remodeling 23 0.281 0.021
16 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 0.281 0.102
17 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.272 0.163
18 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 0.269 0.047
19 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.256 0.120
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.256 0.130
21 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.243 -0.125
22 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.240 0.046
23 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 0.234 0.019
24 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 0.232 0.004
25 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.231 0.037
26 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.229 0.090
27 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.228 0.127
28 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.228 0.001
29 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 0.223 0.057
30 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 0.222 0.016
31 261216_at AT1G33030 [O-methyltransferase family protein] 0.219 0.082
32 263182_at AT1G05575 unknown 0.218 0.052
33 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.217 -0.009
34 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.215 0.000
35 248321_at AT5G52740 [Copper transport protein family] 0.211 0.018
36 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] 0.208 0.044
37 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.206 0.016
38 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.205 -0.052
39 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.203 -0.053
40 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.203 0.068
41 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.200 0.053
42 267268_at AT2G02570 [nucleic acid binding] 0.200 0.016
43 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 0.198 0.110
44 259534_at AT1G12290 [Disease resistance protein (CC-NBS-LRR class) family] 0.187 0.076
45 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.184 0.047
46 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.181 0.017
47 245600_at AT4G14230 unknown 0.179 0.102
48 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.173 -0.018
49 257191_at AT3G13175 unknown 0.173 -0.030
50 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 0.169 0.045
51 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.169 -0.105
52 254043_at AT4G25990 CIL 0.169 0.039
53 266140_at AT2G28120 [Major facilitator superfamily protein] 0.167 0.120
54 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.167 0.034
55 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] 0.167 0.059
56 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.163 0.064
57 247216_at AT5G64860 DPE1, disproportionating enzyme 0.162 -0.011
58 260671_at AT1G19310 [RING/U-box superfamily protein] 0.161 0.062
59 247444_at AT5G62630 HIPL2, hipl2 protein precursor 0.161 0.022
60 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 0.159 0.096
61 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.156 -0.011
62 262232_at AT1G68600 [Aluminium activated malate transporter family protein] 0.156 0.103
63 257473_at AT1G33840 unknown 0.155 -0.023
64 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 0.155 -0.038
65 249059_at AT5G44530 [Subtilase family protein] 0.154 0.035
66 263118_at AT1G03090 MCCA 0.153 0.039
67 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 0.152 0.070
68 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.152 0.035
69 250604_at AT5G07830 AtGUS2, glucuronidase 2, GUS2, glucuronidase 2 0.151 -0.005
70 253998_at AT4G26010 [Peroxidase superfamily protein] -0.967 -0.046
71 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.933 -0.046
72 261157_at AT1G34510 [Peroxidase superfamily protein] -0.886 -0.252
73 255516_at AT4G02270 RHS13, root hair specific 13 -0.861 -0.096
74 250778_at AT5G05500 MOP10 -0.805 -0.067
75 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.748 -0.064
76 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.744 -0.128
77 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.738 -0.112
78 246991_at AT5G67400 RHS19, root hair specific 19 -0.733 -0.065
79 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.727 -0.159
80 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.714 -0.142
81 253667_at AT4G30170 [Peroxidase family protein] -0.677 -0.115
82 265102_at AT1G30870 [Peroxidase superfamily protein] -0.653 -0.069
83 252238_at AT3G49960 [Peroxidase superfamily protein] -0.621 -0.029
84 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.612 -0.092
85 259276_at AT3G01190 [Peroxidase superfamily protein] -0.610 -0.034
86 246825_at AT5G26260 [TRAF-like family protein] -0.591 -0.109
87 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.573 -0.139
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.561 -0.089
89 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.533 -0.088
90 249934_at AT5G22410 RHS18, root hair specific 18 -0.519 -0.003
91 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.471 -0.050
92 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.471 -0.060
93 253582_at AT4G30670 [Putative membrane lipoprotein] -0.466 -0.007
94 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.462 -0.189
95 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.462 -0.071
96 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.410 -0.320
97 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.407 -0.064
98 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.391 -0.160
99 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.386 -0.136
100 250696_at AT5G06790 unknown -0.374 0.053
101 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.367 0.097
102 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.361 -0.089
103 257924_at AT3G23190 [HR-like lesion-inducing protein-related] -0.357 -0.108
104 266591_at AT2G46225 ABIL1, ABI-1-like 1 -0.354 -0.033
105 258765_at AT3G10710 RHS12, root hair specific 12 -0.348 -0.043
106 251918_at AT3G54040 [PAR1 protein] -0.326 -0.066
107 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.322 0.029
108 250469_at AT5G10130 [Pollen Ole e 1 allergen and extensin family protein] -0.322 -0.032
109 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.319 -0.045
110 246125_at AT5G19875 unknown -0.302 0.014
111 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.292 -0.038
112 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.292 0.013
113 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 -0.291 -0.076
114 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.291 -0.058
115 250323_at AT5G12880 [proline-rich family protein] -0.289 -0.054
116 246149_at AT5G19890 [Peroxidase superfamily protein] -0.288 0.243
117 247024_at AT5G66985 unknown -0.286 0.002
118 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.285 -0.044
119 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.278 -0.088
120 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.278 0.033
121 260527_at AT2G47270 UPB1, UPBEAT1 -0.276 0.369
122 256674_at AT3G52360 unknown -0.276 0.009
123 245113_at AT2G41660 MIZ1, mizu-kussei 1 -0.276 -0.133
124 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.272 -0.027
125 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E -0.271 0.095
126 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.266 0.022
127 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 -0.265 0.060
128 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] -0.261 -0.010
129 266581_at AT2G46140 [Late embryogenesis abundant protein] -0.260 -0.065
130 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.259 0.129
131 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.258 -0.106
132 259478_at AT1G18980 [RmlC-like cupins superfamily protein] -0.256 -0.081
133 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 -0.254 -0.001
134 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 -0.254 0.037
135 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.252 -0.036
136 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.249 -0.135
137 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.246 -0.010