4.0:Information of module
toc1-1-69hr
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044260 cellular macromolecule metabolic process BP 4.309e-07
GO:0043170 macromolecule metabolic process BP 4.369e-07
GO:0071704 organic substance metabolic process BP 4.527e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.221e-09
GO:0044723 single-organism carbohydrate metabolic p... BP 5.403e-09
GO:0006007 glucose catabolic process BP 1.241e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
toc1-1-69hr		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.719 0.108
2 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.665 0.009
3 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.547 0.024
4 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.418 0.252
5 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.373 0.009
6 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.336 -0.003
7 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 0.308 -0.025
8 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 0.259 -0.059
9 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.257 0.157
10 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.244 0.384
11 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.238 -0.008
12 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 0.232 0.091
13 245003_at ATCG00280 PSBC, photosystem II reaction center protein C 0.230 -0.012
14 257650_at AT3G16800 [Protein phosphatase 2C family protein] 0.207 0.010
15 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.199 0.085
16 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.191 0.116
17 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.187 -0.045
18 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.185 0.181
19 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.180 -0.020
20 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.179 -0.050
21 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.173 0.143
22 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.172 -0.051
23 245596_at AT4G14180 AtPRD1, putative recombination initiation defect 1, PRD1, putative recombination initiation defect 1 0.167 0.011
24 264756_at AT1G61370 [S-locus lectin protein kinase family protein] 0.167 0.071
25 259762_at AT1G77600 [ARM repeat superfamily protein] 0.163 0.050
26 248060_at AT5G55560 [Protein kinase superfamily protein] 0.162 0.016
27 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.162 0.110
28 254248_at AT4G23270 CRK19, cysteine-rich RLK (RECEPTOR-like protein kinase) 19 0.161 0.123
29 261588_at AT1G01670 [RING/U-box superfamily protein] 0.158 -0.061
30 248106_at AT5G55100 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] 0.156 0.108
31 254457_at AT4G21170 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.154 0.012
32 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.151 -0.001
33 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.149 0.159
34 267341_at AT2G44200 [CBF1-interacting co-repressor CIR, N-terminal] 0.149 0.136
35 252034_at AT3G52040 unknown 0.148 -0.043
36 246039_at AT5G19480 unknown 0.145 0.053
37 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.144 0.105
38 254437_s_at AT3G06433 [pseudogene] 0.140 -0.035
39 266222_at AT2G28780 unknown 0.137 0.036
40 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.135 -0.017
41 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.132 0.020
42 258197_at AT3G14000 ATBRXL2, BRX-LIKE2 0.131 -0.081
43 253042_at AT4G37550 [Acetamidase/Formamidase family protein] 0.131 0.019
44 260307_at AT1G70620 [cyclin-related] 0.126 0.085
45 259533_at AT1G12530 MOS9, modifier of snc1 9 0.126 -0.069
46 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.125 0.000
47 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.121 -0.022
48 245184_at AT1G67790 unknown 0.121 -0.060
49 260466_at AT1G10900 [Phosphatidylinositol-4-phosphate 5-kinase family protein] 0.120 0.074
50 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.119 0.001
51 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 0.119 0.100
52 245932_at AT5G09290 [Inositol monophosphatase family protein] 0.118 0.024
53 248192_at AT5G54140 ILL3, IAA-leucine-resistant (ILR1)-like 3 0.114 -0.037
54 260832_at AT1G06780 GAUT6, galacturonosyltransferase 6 0.114 0.004
55 260981_at AT1G53460 unknown 0.113 0.001
56 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.417 -0.070
57 263552_x_at AT2G24980 EXT6, extensin 6 -0.337 -0.104
58 266591_at AT2G46225 ABIL1, ABI-1-like 1 -0.337 0.031
59 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.331 -0.031
60 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 -0.306 -0.123
61 257925_at AT3G23170 unknown -0.297 -0.089
62 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.269 -0.026
63 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.250 0.017
64 262651_at AT1G14100 FUT8, fucosyltransferase 8 -0.250 -0.035
65 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.250 -0.096
66 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.247 -0.034
67 267623_at AT2G39650 unknown -0.244 0.024
68 253243_at AT4G34560 unknown -0.243 -0.068
69 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.240 -0.113
70 251688_at AT3G56480 [myosin heavy chain-related] -0.238 0.028
71 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.237 -0.014
72 255140_x_at AT4G08410 [Proline-rich extensin-like family protein] -0.232 -0.040
73 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.224 -0.041
74 265155_at AT1G30990 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.223 -0.082
75 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 -0.221 0.034
76 248750_at AT5G47530 [Auxin-responsive family protein] -0.220 0.063
77 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.218 -0.109
78 256916_at AT3G24050 GATA1, GATA transcription factor 1 -0.213 -0.034
79 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.210 0.042
80 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.201 -0.051
81 254132_at AT4G24660 ATHB22, HOMEOBOX PROTEIN 22, HB22, homeobox protein 22, MEE68, MATERNAL EFFECT EMBRYO ARREST 68, ZHD2, ZINC FINGER HOMEODOMAIN 2 -0.196 -0.155
82 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 -0.186 0.064
83 264404_at AT2G25160 CYP82F1, cytochrome P450, family 82, subfamily F, polypeptide 1 -0.186 -0.044
84 261841_at AT1G15920 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.186 -0.017
85 251179_at AT3G63460 SEC31B -0.184 0.016
86 254085_at AT4G24960 ATHVA22D, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22D, HVA22 homologue D -0.182 -0.077
87 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 -0.182 -0.086
88 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E -0.181 -0.093
89 251292_at AT3G61920 unknown -0.179 -0.330
90 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 -0.177 -0.083
91 265005_at AT1G61667 unknown -0.176 -0.072
92 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] -0.175 -0.120
93 263850_at AT2G04480 unknown -0.173 0.016
94 265098_at AT1G04010 ATPSAT1, ERP1, enhanced response to Phytophthora 1, PSAT1, phospholipid sterol acyl transferase 1 -0.173 -0.034
95 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.171 -0.024
96 262915_at AT1G59940 ARR3, response regulator 3 -0.170 -0.049
97 263373_at AT2G20515 unknown -0.169 -0.094
98 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 -0.166 -0.050
99 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.163 -0.043
100 256603_at AT3G28270 unknown -0.163 -0.110
101 256416_at AT3G11050 ATFER2, ferritin 2, FER2, ferritin 2 -0.161 -0.059
102 245776_at AT1G30260 unknown -0.160 -0.110
103 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.160 -0.059
104 265699_at AT2G03550 [alpha/beta-Hydrolases superfamily protein] -0.160 -0.048
105 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.159 -0.057
106 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.157 -0.052
107 263050_at AT2G05170 ATVPS11, vacuolar protein sorting 11, VPS11, vacuolar protein sorting 11 -0.155 0.033
108 252427_at AT3G47640 PYE, POPEYE -0.153 0.026
109 253166_at AT4G35290 ATGLR3.2, ATGLUR2, GLR3.2, GLUTAMATE RECEPTOR 3.2, GLUR2, glutamate receptor 2 -0.152 -0.056