4.0:Information of module
Nicotinamide-53hr
In comparison with aerial organ callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.148e-20
GO:0050896 response to stimulus BP 2.948e-18
GO:1901700 response to oxygen-containing compound BP 1.475e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007017 microtubule-based process BP 2.446e-10
GO:0000226 microtubule cytoskeleton organization BP 5.732e-10
GO:1903047 mitotic cell cycle process BP 6.005e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Nicotinamide-53hr		 Log2 signal ratio
aerial organ callus inducing medium 48 h
1 260527_at AT2G47270 UPB1, UPBEAT1 0.999 0.886
2 262047_at AT1G80160 GLYI7, glyoxylase I 7 0.974 0.684
3 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.972 0.104
4 263402_at AT2G04050 [MATE efflux family protein] 0.968 0.084
5 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.929 0.109
6 256969_at AT3G21080 [ABC transporter-related] 0.845 0.321
7 249459_at AT5G39580 [Peroxidase superfamily protein] 0.835 0.850
8 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.825 0.703
9 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.807 0.887
10 250798_at AT5G05340 PRX52, peroxidase 52 0.801 0.685
11 249454_at AT5G39520 unknown 0.733 0.951
12 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.725 0.265
13 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] 0.711 0.488
14 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.707 0.274
15 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.705 -0.045
16 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 0.701 0.915
17 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.672 0.895
18 263475_at AT2G31945 unknown 0.662 0.406
19 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.659 0.138
20 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.653 0.591
21 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.651 0.618
22 267036_at AT2G38465 unknown 0.635 0.393
23 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.628 0.128
24 260744_at AT1G15010 unknown 0.624 -0.047
25 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.615 0.450
26 258813_at AT3G04060 anac046, NAC domain containing protein 46, NAC046, NAC domain containing protein 46 0.606 0.112
27 247205_at AT5G64890 PROPEP2, elicitor peptide 2 precursor 0.603 0.237
28 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.595 0.103
29 251647_at AT3G57770 [Protein kinase superfamily protein] 0.586 -0.116
30 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.583 0.088
31 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.567 0.346
32 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.553 0.039
33 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.548 0.923
34 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 0.547 0.243
35 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.534 0.592
36 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.533 0.373
37 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.522 -0.031
38 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.509 -0.176
39 264809_at AT1G08830 CSD1, copper/zinc superoxide dismutase 1 0.509 0.006
40 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.507 0.473
41 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.500 -0.096
42 253322_at AT4G33980 unknown 0.490 0.328
43 264082_at AT2G28570 unknown 0.487 -0.015
44 257950_at AT3G21780 UGT71B6, UDP-glucosyl transferase 71B6 0.482 0.047
45 253827_at AT4G28085 unknown 0.480 0.336
46 245794_at AT1G32170 XTH30, xyloglucan endotransglucosylase/hydrolase 30, XTR4, xyloglucan endotransglycosylase 4 0.476 0.236
47 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.475 0.017
48 261934_at AT1G22400 ATUGT85A1, ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UGT85A1 0.471 -0.093
49 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.471 0.259
50 251621_at AT3G57700 [Protein kinase superfamily protein] 0.463 0.582
51 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.461 0.114
52 256839_at AT3G22930 AtCML11, CML11, calmodulin-like 11 0.454 0.401
53 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.451 0.509
54 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.450 0.205
55 245705_at AT5G04390 [C2H2-type zinc finger family protein] 0.448 0.181
56 248934_at AT5G46080 [Protein kinase superfamily protein] 0.444 0.313
57 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J 0.441 0.150
58 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 0.438 0.190
59 259945_at AT1G71460 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.437 -0.231
60 264288_at AT1G62045 unknown 0.437 0.118
61 249705_at AT5G35580 [Protein kinase superfamily protein] 0.435 0.024
62 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] 0.433 0.376
63 258110_at AT3G14610 CYP72A7, cytochrome P450, family 72, subfamily A, polypeptide 7 0.432 0.541
64 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.431 -0.078
65 247177_at AT5G65300 unknown 0.431 0.203
66 262001_at AT1G33790 [jacalin lectin family protein] 0.430 0.442
67 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.428 0.352
68 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.423 -0.048
69 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.421 -0.676
70 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.420 0.153
71 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.418 -0.418
72 260337_at AT1G69310 ATWRKY57, WRKY57, WRKY DNA-binding protein 57 0.416 0.039
73 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.415 0.461
74 258323_at AT3G22750 [Protein kinase superfamily protein] 0.414 0.254
75 244974_at ATCG00700 PSBN, photosystem II reaction center protein N 0.411 -0.398
76 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.411 0.621
77 253998_at AT4G26010 [Peroxidase superfamily protein] -1.069 -0.149
78 265063_at AT1G61500 [S-locus lectin protein kinase family protein] -0.863 -0.142
79 255516_at AT4G02270 RHS13, root hair specific 13 -0.832 -0.151
80 261157_at AT1G34510 [Peroxidase superfamily protein] -0.822 -0.129
81 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.815 -0.215
82 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.784 -0.353
83 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.776 -0.938
84 252612_at AT3G45160 [Putative membrane lipoprotein] -0.735 -0.537
85 246991_at AT5G67400 RHS19, root hair specific 19 -0.731 -0.073
86 258341_at AT3G22790 NET1A, Networked 1A -0.693 0.021
87 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.684 0.579
88 264240_at AT1G54820 [Protein kinase superfamily protein] -0.675 -0.747
89 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.674 -0.165
90 255265_at AT4G05190 ATK5, kinesin 5 -0.673 -0.091
91 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.662 -0.458
92 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.659 0.682
93 262598_at AT1G15260 unknown -0.651 -0.277
94 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.651 -1.001
95 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.646 -0.214
96 253667_at AT4G30170 [Peroxidase family protein] -0.623 0.062
97 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.621 0.354
98 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.619 -0.537
99 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.614 -0.335
100 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.610 -0.012
101 246415_at AT5G17160 unknown -0.591 0.059
102 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.579 0.606
103 255621_at AT4G01390 [TRAF-like family protein] -0.577 -0.393
104 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.574 -0.293
105 263902_at AT2G36230 APG10, ALBINO AND PALE GREEN 10, HISN3 -0.569 -0.101
106 259091_at AT3G04890 [Uncharacterized conserved protein (DUF2358)] -0.566 -0.086
107 247760_at AT5G59130 [Subtilase family protein] -0.557 -0.683
108 248057_at AT5G55520 unknown -0.545 -0.065
109 247603_at AT5G60930 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.543 -0.061
110 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.542 0.014
111 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 -0.523 -0.135
112 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.521 0.433
113 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.517 0.005
114 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II -0.516 -0.104
115 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.514 -0.057
116 246825_at AT5G26260 [TRAF-like family protein] -0.513 0.032
117 266009_at AT2G37420 [ATP binding microtubule motor family protein] -0.506 0.116
118 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 -0.505 -0.036
119 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.504 0.016
120 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 -0.503 0.084
121 252148_at AT3G51280 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.502 0.069
122 267388_at AT2G44450 BGLU15, beta glucosidase 15 -0.493 0.303
123 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.489 -0.466
124 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] -0.472 -0.315
125 249002_at AT5G44520 [NagB/RpiA/CoA transferase-like superfamily protein] -0.467 -0.279
126 255410_at AT4G03100 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] -0.457 -0.030
127 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] -0.454 -0.013
128 255876_at AT2G40480 unknown -0.454 -0.124
129 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.453 0.053
130 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.452 -0.541
131 246920_at AT5G25090 AtENODL13, ENODL13, early nodulin-like protein 13 -0.450 -0.083
132 254371_at AT4G21760 BGLU47, beta-glucosidase 47 -0.449 -0.141
133 262651_at AT1G14100 FUT8, fucosyltransferase 8 -0.448 -0.029
134 247028_at AT5G67100 ICU2, INCURVATA2 -0.446 -0.084
135 255851_at AT1G67040 TRM22, TON1 Recruiting Motif 22 -0.444 -0.294
136 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 -0.442 -0.027
137 257761_at AT3G23090 WDL3 -0.441 0.284
138 250381_at AT5G11610 [Exostosin family protein] -0.440 -0.033
139 245930_at AT5G09240 [ssDNA-binding transcriptional regulator] -0.433 -0.105
140 265083_at AT1G03820 unknown -0.431 0.153
141 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 -0.429 -0.105
142 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.426 -0.312
143 245575_at AT4G14760 NET1B, Networked 1B -0.425 -0.005
144 253254_at AT4G34650 SQS2, squalene synthase 2 -0.425 -0.311
145 247452_at AT5G62430 CDF1, cycling DOF factor 1 -0.421 -0.252
146 256585_at AT3G28760 unknown -0.420 -0.367
147 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.418 0.095
148 252089_at AT3G52110 unknown -0.417 -0.112
149 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.417 -0.086
150 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 -0.416 0.320
151 263687_at AT1G26940 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.406 0.024