4.0:Information of module
15m.KNO3
In comparison with root callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901698 response to nitrogen compound BP 1.069e-10
GO:0010200 response to chitin BP 2.054e-09
GO:0010243 response to organonitrogen compound BP 2.170e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016572 histone phosphorylation BP 1.152e-04
GO:0006260 DNA replication BP 7.972e-04
GO:0008283 cell proliferation BP 8.281e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
15m.KNO3		 Log2 signal ratio
root callus inducing medium 96 h
1 250472_at AT5G10210 unknown 0.967 -0.932
2 257645_at AT3G25790 [myb-like transcription factor family protein] 0.924 -0.522
3 259015_at AT3G07350 unknown 0.827 -0.783
4 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.761 0.132
5 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] 0.732 -0.649
6 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.647 -0.106
7 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.607 -0.033
8 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.599 -0.758
9 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.571 -0.288
10 244970_at ATCG00660 RPL20, ribosomal protein L20 0.554 -0.181
11 255734_at AT1G25550 [myb-like transcription factor family protein] 0.535 -0.539
12 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.534 -0.442
13 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.529 -0.615
14 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.512 -0.033
15 253643_at AT4G29780 unknown 0.512 -0.886
16 258606_at AT3G02840 [ARM repeat superfamily protein] 0.496 -1.431
17 263402_at AT2G04050 [MATE efflux family protein] 0.473 -0.235
18 255945_at AT5G28610 unknown 0.437 -1.371
19 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] 0.397 -0.475
20 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.394 -0.870
21 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.394 0.170
22 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.384 -0.121
23 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.382 -0.664
24 267548_at AT2G32660 AtRLP22, receptor like protein 22, RLP22, receptor like protein 22 0.380 0.359
25 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.364 -0.054
26 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.359 -0.154
27 255543_at AT4G01870 [tolB protein-related] 0.356 -0.245
28 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.353 -0.483
29 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 0.351 -0.289
30 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.340 -0.339
31 248392_at AT5G52050 [MATE efflux family protein] 0.337 -0.710
32 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.326 -0.422
33 262284_at AT1G68670 [myb-like transcription factor family protein] 0.319 -0.537
34 246997_at AT5G67390 unknown 0.312 0.067
35 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.310 -0.674
36 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.309 0.333
37 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.305 -0.609
38 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 0.288 -0.229
39 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.287 -0.108
40 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.287 -0.518
41 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.263 -1.085
42 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.258 -0.230
43 247199_at AT5G65210 TGA1, TGACG sequence-specific binding protein 1 0.257 -0.297
44 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 0.245 -0.329
45 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.244 0.027
46 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.242 -0.463
47 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.310 -0.002
48 248577_at AT5G49870 [Mannose-binding lectin superfamily protein] -0.306 -0.183
49 254240_at AT4G23496 SP1L5, SPIRAL1-like5 -0.260 -0.025
50 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.243 0.743
51 246200_at AT4G37240 unknown -0.241 0.194
52 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] -0.238 -0.127
53 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.226 -0.164
54 261221_at AT1G19960 unknown -0.223 -0.477
55 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.219 -0.084
56 255757_at AT4G00460 ATROPGEF3, ROPGEF3, ROP (rho of plants) guanine nucleotide exchange factor 3 -0.213 0.076
57 253148_at AT4G35620 CYCB2;2, Cyclin B2;2 -0.212 0.607
58 266626_at AT2G35360 [ubiquitin family protein] -0.199 -0.015
59 254939_at AT4G10800 unknown -0.195 0.127
60 258209_at AT3G14060 unknown -0.194 0.402
61 265682_at AT2G24390 [AIG2-like (avirulence induced gene) family protein] -0.192 -0.034
62 262631_at AT1G06500 unknown -0.182 0.201
63 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 -0.179 0.317
64 250975_at AT5G03050 unknown -0.179 0.050
65 245108_at AT2G41510 ATCKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, CKX1, cytokinin oxidase/dehydrogenase 1 -0.178 0.532
66 258019_at AT3G19470 [F-box and associated interaction domains-containing protein] -0.177 0.075
67 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] -0.175 -0.040
68 257593_at AT3G24840 [Sec14p-like phosphatidylinositol transfer family protein] -0.171 -0.206
69 266291_at AT2G29320 [NAD(P)-binding Rossmann-fold superfamily protein] -0.170 -0.175
70 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.170 -0.325
71 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 -0.167 -0.342
72 255854_at AT1G67050 unknown -0.164 0.073
73 262968_at AT1G75720 unknown -0.163 -0.138
74 262438_at AT1G47410 unknown -0.158 0.152
75 245257_at AT4G14640 AtCML8, calmodulin-like 8, CAM8, calmodulin 8, CML8 -0.155 -0.052
76 261863_at AT1G50630 unknown -0.154 -0.343
77 266549_at AT2G35150 EXL7, EXORDIUM LIKE 7 -0.154 -0.088
78 261779_at AT1G76230 unknown -0.153 -0.112
79 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] -0.152 0.319
80 260539_at AT2G43480 [Peroxidase superfamily protein] -0.148 -0.046
81 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 -0.147 0.310
82 258867_at AT3G03130 unknown -0.145 0.550
83 246316_at AT3G56890 [F-box associated ubiquitination effector family protein] -0.145 -0.161
84 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.141 -0.252
85 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.141 0.116
86 264381_at AT2G25100 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.140 0.208
87 266226_at AT2G28740 HIS4, histone H4 -0.136 0.093
88 267037_at AT2G38320 TBL34, TRICHOME BIREFRINGENCE-LIKE 34 -0.136 -0.223
89 256652_at AT3G18850 LPAT5, lysophosphatidyl acyltransferase 5 -0.134 0.179
90 251378_at AT3G60660 unknown -0.134 0.472
91 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 -0.133 0.000
92 255252_at AT4G04990 unknown -0.133 -0.679