4.0:Information of module
IMI 4mM
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.528e-18
GO:1901700 response to oxygen-containing compound BP 7.009e-17
GO:0050896 response to stimulus BP 3.599e-15
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005982 starch metabolic process BP 8.897e-10
GO:0019252 starch biosynthetic process BP 1.896e-08
GO:0006790 sulfur compound metabolic process BP 3.642e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
IMI 4mM		 Log2 signal ratio
Dark 3day ivd
1 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 1.799 10.033
2 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 1.689 0.318
3 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 1.554 7.989
4 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 1.526 3.351
5 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 1.522 4.570
6 262047_at AT1G80160 GLYI7, glyoxylase I 7 1.516 8.689
7 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 1.468 5.494
8 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 1.464 -0.242
9 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 1.457 -1.245
10 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 1.448 4.003
11 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 1.434 9.119
12 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 1.428 4.281
13 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 1.406 7.059
14 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 1.388 11.586
15 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 1.384 2.987
16 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 1.375 2.921
17 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 1.359 5.768
18 246197_at AT4G37010 CEN2, centrin 2 1.331 3.682
19 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.327 -5.644
20 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 1.296 1.835
21 266292_at AT2G29350 SAG13, senescence-associated gene 13 1.290 1.152
22 260706_at AT1G32350 AOX1D, alternative oxidase 1D 1.289 7.936
23 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 1.287 7.786
24 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 1.275 3.150
25 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 1.273 1.853
26 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 1.264 1.535
27 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 1.263 7.444
28 256407_at AT1G66570 ATSUC7, sucrose-proton symporter 7, SUC7, sucrose-proton symporter 7 1.250 4.042
29 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 1.210 6.629
30 250287_at AT5G13330 Rap2.6L, related to AP2 6l 1.208 6.516
31 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 1.201 11.788
32 249454_at AT5G39520 unknown 1.196 8.685
33 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 1.182 7.483
34 267178_at AT2G37750 unknown 1.174 5.043
35 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 1.163 4.838
36 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 1.150 3.326
37 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 1.145 8.100
38 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 1.139 7.019
39 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 1.134 3.706
40 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 1.131 -2.482
41 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 1.127 2.435
42 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 1.126 7.539
43 256024_at AT1G58340 BCD1, BUSH-AND-CHLOROTIC-DWARF 1, ZF14, ZRZ, ZRIZI 1.100 8.439
44 264433_at AT1G61810 BGLU45, beta-glucosidase 45 1.097 9.083
45 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 1.089 0.900
46 260744_at AT1G15010 unknown 1.083 5.432
47 257061_at AT3G18250 [Putative membrane lipoprotein] 1.074 3.735
48 249197_at AT5G42380 CML37, calmodulin like 37 1.073 2.093
49 261545_at AT1G63530 unknown 1.071 2.870
50 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 1.068 3.402
51 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 1.068 6.511
52 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 1.058 8.121
53 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 1.057 1.824
54 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 1.055 3.231
55 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 1.053 9.662
56 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 1.045 2.029
57 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 1.043 3.449
58 258606_at AT3G02840 [ARM repeat superfamily protein] 1.040 2.292
59 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 1.038 4.007
60 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 1.036 -0.456
61 264648_at AT1G09080 BIP3, binding protein 3 1.031 0.488
62 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.994 7.143
63 261838_at AT1G16030 Hsp70b, heat shock protein 70B 0.992 0.624
64 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.974 6.279
65 264005_at AT2G22470 AGP2, arabinogalactan protein 2, ATAGP2 0.967 3.078
66 252136_at AT3G50770 CML41, calmodulin-like 41 0.947 2.974
67 261216_at AT1G33030 [O-methyltransferase family protein] 0.937 1.616
68 251743_at AT3G55890 [Yippee family putative zinc-binding protein] 0.937 6.136
69 257591_at AT3G24900 AtRLP39, receptor like protein 39, RLP39, receptor like protein 39 0.931 -4.433
70 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.928 1.940
71 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 0.925 3.885
72 259150_at AT3G10320 [Glycosyltransferase family 61 protein] 0.914 6.234
73 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 0.912 -0.860
74 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] 0.897 -3.142
75 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.895 1.760
76 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.892 2.361
77 264280_at AT1G61820 BGLU46, beta glucosidase 46 0.859 11.480
78 263851_at AT2G04460 unknown 0.855 -0.071
79 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.982 -2.674
80 259660_at AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 -0.931 -3.698
81 245688_at AT1G28290 AGP31, arabinogalactan protein 31 -0.922 -6.069
82 263431_at AT2G22170 PLAT2, PLAT domain protein 2 -0.917 -0.140
83 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.856 -3.821
84 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.850 -1.155
85 264987_at AT1G27030 unknown -0.849 -0.304
86 249410_at AT5G40380 CRK42, cysteine-rich RLK (RECEPTOR-like protein kinase) 42 -0.781 -3.067
87 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.776 -4.567
88 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.767 4.036
89 255690_at AT4G00360 ATT1, ABERRANT INDUCTION OF TYPE THREE 1, CYP86A2, cytochrome P450, family 86, subfamily A, polypeptide 2 -0.759 -1.633
90 262871_at AT1G65010 [INVOLVED IN: flower development] -0.757 -4.204
91 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.733 -0.743
92 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.706 -4.102
93 258470_at AT3G06035 [Glycoprotein membrane precursor GPI-anchored] -0.701 -3.860
94 252612_at AT3G45160 [Putative membrane lipoprotein] -0.695 0.605
95 250261_at AT5G13400 [Major facilitator superfamily protein] -0.688 -2.385
96 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.686 -1.566
97 261570_at AT1G01120 KCS1, 3-ketoacyl-CoA synthase 1 -0.658 -3.009
98 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.643 -1.029
99 245743_at AT1G51080 unknown -0.641 -2.685
100 258719_at AT3G09540 [Pectin lyase-like superfamily protein] -0.631 -1.396
101 253286_at AT4G34260 AXY8, ALTERED XYLOGLUCAN 8, FUC95A -0.623 -4.305
102 258938_at AT3G10080 [RmlC-like cupins superfamily protein] -0.614 -6.903
103 259788_at AT1G29670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.609 0.337
104 263574_at AT2G16990 [Major facilitator superfamily protein] -0.602 -0.570
105 247288_at AT5G64330 JK218, NPH3, NON-PHOTOTROPIC HYPOCOTYL 3, RPT3, ROOT PHOTOTROPISM 3 -0.602 1.747
106 253493_at AT4G31820 ENP, ENHANCER OF PINOID, MAB4, MACCHI-BOU 4, NPY1, NAKED PINS IN YUC MUTANTS 1 -0.599 -0.270
107 253090_at AT4G36360 BGAL3, beta-galactosidase 3 -0.587 -6.365
108 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.581 -5.916
109 248969_at AT5G45310 unknown -0.579 4.241
110 258017_at AT3G19370 unknown -0.575 -1.538
111 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.572 2.241
112 247037_at AT5G67070 RALFL34, ralf-like 34 -0.562 -2.405
113 265869_at AT2G01760 ARR14, response regulator 14, RR14, response regulator 14 -0.562 -2.302
114 249118_at AT5G43870 [FUNCTIONS IN: phosphoinositide binding] -0.554 -3.066
115 263902_at AT2G36230 APG10, ALBINO AND PALE GREEN 10, HISN3 -0.542 -2.680
116 251788_at AT3G55420 unknown -0.536 -2.986
117 265884_at AT2G42320 [nucleolar protein gar2-related] -0.535 -4.119
118 258196_at AT3G13980 unknown -0.534 -1.527
119 247069_at AT5G66920 sks17, SKU5 similar 17 -0.531 -2.613
120 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.527 -2.919
121 265938_at AT2G19620 NDL3, N-MYC downregulated-like 3 -0.526 -3.358
122 260922_at AT1G21560 unknown -0.519 -3.142
123 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.504 -3.532
124 255824_at AT2G40530 unknown -0.504 -1.673
125 259430_at AT1G01610 ATGPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4, GPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4 -0.502 -1.304
126 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 -0.501 1.683
127 267344_at AT2G44230 unknown -0.499 -4.346
128 267310_at AT2G34680 AIR9, AUXIN-INDUCED IN ROOT CULTURES 9 -0.485 -2.239
129 248273_at AT5G53500 [Transducin/WD40 repeat-like superfamily protein] -0.482 -1.712
130 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.480 -2.125
131 258676_at AT3G08600 unknown -0.477 -2.174
132 255488_at AT4G02630 [Protein kinase superfamily protein] -0.474 -3.251
133 264371_at AT1G12090 ELP, extensin-like protein -0.468 -1.585
134 267040_at AT2G34300 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.468 -2.725
135 257236_at AT3G15095 HCF243, high chlorophyll fluorescence 243 -0.460 -1.223
136 259692_at AT1G63080 [Pentatricopeptide repeat (PPR) superfamily protein] -0.459 -1.012
137 250975_at AT5G03050 unknown -0.454 0.331
138 258432_at AT3G16570 ATRALF23, ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, RALF23, rapid alkalinization factor 23 -0.453 -0.732
139 265844_at AT2G35620 FEI2, FEI 2 -0.453 -2.294
140 255948_at AT1G22060 [LOCATED IN: vacuole] -0.450 -1.058
141 256441_at AT3G10940 LSF2, LIKE SEX4 2 -0.444 -5.711
142 261451_at AT1G21060 unknown -0.441 -1.350
143 258368_at AT3G14240 [Subtilase family protein] -0.438 -2.260
144 260770_at AT1G49200 [RING/U-box superfamily protein] -0.433 -6.150
145 255617_at AT4G01330 [Protein kinase superfamily protein] -0.429 0.319
146 254193_at AT4G23870 unknown -0.425 3.530
147 247486_at AT5G62140 unknown -0.424 -2.839
148 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.424 -3.928
149 253903_at AT4G27180 ATK2, kinesin 2, KATB, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B -0.423 -0.081
150 251676_at AT3G57320 unknown -0.418 -1.142
151 247041_at AT5G67180 TOE3, target of early activation tagged (EAT) 3 -0.417 -0.954
152 257516_at AT1G69040 ACR4, ACT domain repeat 4 -0.411 0.276
153 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 -0.410 -3.942
154 262312_at AT1G70830 MLP28, MLP-like protein 28 -0.410 1.443
155 250245_at AT5G13690 CYL1, CYCLOPS 1, NAGLU, N-ACETYL-GLUCOSAMINIDASE -0.408 -1.427